BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0118000 Os07g0118000|Os07g0118000
(455 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425 70 2e-12
AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055 57 2e-08
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 51 1e-06
>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
Length = 1424
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 17/223 (7%)
Query: 136 LFNRQMEMEHIMNFLLKDNTSSNQNPGVLPIIGPSNVGKSTLIEHACNDERVRNHF---- 191
L R + ++N LL D+ S P V+ ++G VGK+TL E ND RV HF
Sbjct: 168 LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKM 227
Query: 192 -------FQIVCFSVDDLED--ANMVTLRNCGVIKHQNHAT-GGERILIIVELIRDINEG 241
F + + L+D ++ V + ++ Q T G+R L++++ ++
Sbjct: 228 WISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDS 287
Query: 242 AWRRLYSASKTCAANGSKIIVASRSDSISSFGTTHAL-RVKFFTQEAYWYFFKVRTFGSM 300
W + + T A GSKI++ +RS+ +S+ + ++K T E W FG++
Sbjct: 288 EWES-FQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNI 346
Query: 301 DAAE-HPKLESIAVDMAMELNGCFMGSNVYSVLLRENFNDKFW 342
+ +LE I +A + G + + + LR N W
Sbjct: 347 SVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDW 389
>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
Length = 1054
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 19/225 (8%)
Query: 127 STHLVLDKCLFNRQMEMEHIMNFLLKDNTSSNQNPGVLPIIGPSNVGKSTLIEHACNDER 186
+T LV + +F R + + IM FL+ +N N V+ I+G VGK+TL + ND+
Sbjct: 163 TTSLVDESEVFGRDDDKDEIMRFLIPENGKDN-GITVVAIVGIGGVGKTTLSQLLYNDQH 221
Query: 187 VRNHFFQIVCFSVDDLEDA--------NMVTLRNCGV-------IKHQNHATG-GERILI 230
VR++F V V + D VT R C +K + TG G L+
Sbjct: 222 VRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLL 281
Query: 231 IVELIRDINEGAWRRLYSASKTCAANGSKIIVASRSDSISSFG-TTHALRVKFFTQEAYW 289
+++ + + N W L AA GS+I+V +RS ++S H ++ + W
Sbjct: 282 VLDDLWNENFADW-DLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCW 340
Query: 290 YFFKVRTFGSMDAAEHPKLESIAVDMAMELNGCFMGSNVYSVLLR 334
F FG+ + + ++ +A + + G + +LR
Sbjct: 341 SLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLR 385
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 163 VLPIIGPSNVGKSTLIEHACNDERVRNHFFQIVCFSVDDL---EDANMVTLRNCG----- 214
++ +G +GK+T+ + ND+ + + F + + SV E LRN G
Sbjct: 184 IMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNLGDASVG 243
Query: 215 -----VIKHQNHATGGERILIIVELIRDINEGAWRRLYSASKTCAANGSKIIVASRSDSI 269
+++ G+R LI+++ + D N W ++Y G +IV +RS+S+
Sbjct: 244 DDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLP--RGQGGSVIVTTRSESV 301
Query: 270 SSF-----GTTHALRVKFFTQEAYWYFFKVRTFGSMDAA-EHPKLESIAVDMAMELNG 321
+ TH R + + + W F F + D E P+LE + ++ + G
Sbjct: 302 AKRVQARDDKTH--RPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKG 357
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,604,409
Number of extensions: 402021
Number of successful extensions: 1150
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,310,137
Effective search space: 2933478361
Effective search space used: 2933478361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)