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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0117400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0389) R2 : 0.255
β1 : -1.43 (0.15) R2dD : 0.177 R2D : 0.0344
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.88 (0.175) R2dE : 0.234 R2E : 0.0755
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.0876) R2dN8 : 0.0256 R2N8 : -0.0413
σ : 0.717
deviance : 236.74
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 4.527
memory length : 1205
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.25 0.702 4.03 -1.32 0.801 1.92 0.566 0.47 -0.239 6.04 10.53 835 -- --
222.42 0.695 4.05 -1.46 0.546 1.8 0.51 -- -0.286 5.64 1.734 1131 -- --
222.5 0.695 4.04 -1.3 0.529 1.79 -- 0.563 -0.243 5.47 14.11 1143 -- --
222.73 0.695 4.05 -1.42 0.535 1.8 -- -- -0.274 5.5 3.44 1139 -- --
236.44 0.716 4.05 -1.3 -- 1.87 -- 0.607 -0.245 -- 14.2 1206 -- --
272.79 0.774 3.98 -0.881 0.646 -- 0.517 -- 0.0414 4.05 -- -- -- --
273.55 0.775 3.98 -0.887 0.65 -- -- -- 0.0385 4.1 -- -- -- --
236.74 0.717 4.06 -1.43 -- 1.88 -- -- -0.28 -- 4.527 1205 -- --
265.59 0.759 3.99 -- 0.542 0.937 -- -- -0.0185 5.3 21.9 1150 -- --
296.49 0.805 3.99 -0.861 -- -- -- -- 0.0558 -- -- -- -- --
294.3 0.802 3.96 -- 0.633 -- -- -- 0.137 4.13 -- -- -- --
277.19 0.775 3.94 -- -- 0.879 -- -- 0.267 -- 28.55 1264 -- --
316.04 0.83 3.96 -- -- -- -- -- 0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.60 temperature 10 720 > th dose dependent rect. 17 22
10 222.15 temperature 30 4320 > th dose dependent rect. 16 1
13 222.41 temperature 10 30 > th dose dependent rect. 3 23
14 222.42 temperature 10 720 > th dose dependent rect. 9 22
38 223.05 temperature 20 1440 > th dose dependent rect. 18 3
40 223.05 temperature 10 720 > th dose dependent rect. 1 23
43 223.08 temperature 10 720 > th dose dependent rect. 3 23
47 223.16 temperature 10 720 > th dose dependent rect. 14 23
52 223.25 temperature 15 720 > th dose dependent rect. 17 18
60 223.39 temperature 30 720 < th dose dependent rect. 16 22
67 223.55 temperature 30 4320 > th dose independent rect. 17 2
83 223.60 temperature 10 720 > th dose dependent rect. 23 23
96 223.74 temperature 10 720 > th dose dependent no NA NA
99 223.76 temperature 15 720 > th dose dependent rect. 12 23
113 223.90 temperature 10 1440 > th dose dependent rect. 18 1
120 224.03 temperature 10 720 > th dose dependent rect. 3 21
133 224.14 temperature 10 1440 > th dose dependent rect. 18 3
147 224.25 temperature 30 4320 < th dose independent rect. 17 6
149 224.26 temperature 30 4320 < th dose independent rect. 17 2
158 224.28 temperature 10 720 > th dose dependent rect. 3 19
183 224.37 temperature 30 4320 < th dose independent rect. 17 14
188 224.38 temperature 30 4320 < th dose independent rect. 17 12
195 224.38 temperature 30 720 < th dose dependent rect. 5 23
256 224.45 temperature 30 1440 < th dose dependent rect. 18 3
272 224.46 temperature 30 720 < th dose dependent rect. 7 23
329 224.53 temperature 10 1440 > th dose dependent rect. 20 23
375 224.59 temperature 20 1440 > th dose dependent sin 15 NA
381 224.59 temperature 30 720 < th dose dependent rect. 13 22
384 224.59 temperature 30 720 < th dose dependent rect. 2 23
398 224.62 temperature 10 720 > th dose dependent rect. 17 15
443 224.68 temperature 30 4320 > th dose dependent sin 13 NA
518 224.77 temperature 10 1440 > th dose dependent rect. 15 9
531 224.78 temperature 10 1440 > th dose dependent sin 16 NA
590 224.87 temperature 30 720 < th dose dependent no NA NA
749 225.07 temperature 10 1440 > th dose dependent sin 3 NA