BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0117400 Os07g0117400|AK070693
         (506 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            66   6e-11
AT3G14470.1  | chr3:4857940-4861104 FORWARD LENGTH=1055            64   2e-10
AT3G50950.2  | chr3:18936127-18938685 FORWARD LENGTH=853           52   6e-07

>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 17/223 (7%)

Query: 168 LFSRQMEMEHIMNFLLKEDTTGTENPGVLPIIGPGKVGKSTLIEHACDDERVRNHF---- 223
           L  R  +   ++N LL +D      P V+ ++G   VGK+TL E   +D RV  HF    
Sbjct: 168 LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKM 227

Query: 224 --SQIVLFNDDDLEDANILTLRDSGV-------IKHQNHAT-GGKRILIIIELTRDINEG 273
             S  + FN   +  A +  +  S V       ++ Q   T  GKR L++++     ++ 
Sbjct: 228 WISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDS 287

Query: 274 AWRRLYSASKSHVASGSKIIVASRSEKIASFGTTQAL-RVKFFTQEAYWYFFKVRTFGSI 332
            W   +  + +    GSKI++ +RSE +++    + + ++K  T E  W       FG+I
Sbjct: 288 EWES-FQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNI 346

Query: 333 NAVE-HPKLASVAMDIARELNGCFMGASIYSGLLKANINFQFW 374
           +    + +L  +   IA +  G  + A   +  L++  N   W
Sbjct: 347 SVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDW 389



>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
          Length = 1054

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 166/405 (40%), Gaps = 39/405 (9%)

Query: 2   EIFLSAILGDLASRSISFLINKCSKPTVLT--VEEKLQRLLLQACFIVEESDERLIINQA 59
           E+FL+A L  L    +S       K   L   + E+L   LL    ++ +++E+ I N  
Sbjct: 6   EMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQITNPV 65

Query: 60  MLQQLNILRKEMYRGYYTLDSFRCHGHQEYNPKDLEVSSSFAPSMFNPAKRVRFCRVTGQ 119
           + + +N LR  +Y     LD              L ++     S  N  +++R     G 
Sbjct: 66  VEKWVNELRDVVYHAEDALDDIATEA--------LRLNIGAESSSSNRLRQLRGRMSLGD 117

Query: 120 SVQ---EHL---LQQVFGRLEVTIEDMSEFVMFLNSYPRFCRQPYSMHLLLDEC-LFSRQ 172
            +    EHL   L++V  RLE  +      +          +Q      L+DE  +F R 
Sbjct: 118 FLDGNSEHLETRLEKVTIRLE-RLASQRNILGLKELTAMIPKQRLPTTSLVDESEVFGRD 176

Query: 173 MEMEHIMNFLLKEDTTGTENP-GVLPIIGPGKVGKSTLIEHACDDERVRNHFSQIVLFND 231
            + + IM FL+ E+  G +N   V+ I+G G VGK+TL +   +D+ VR++F   V  + 
Sbjct: 177 DDKDEIMRFLIPEN--GKDNGITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAHV 234

Query: 232 DDLEDANILTLR---------------DSGVIKHQNHATG-GKRILIIIELTRDINEGAW 275
            +  D   +T +               D   +K +   TG G   L++++   + N   W
Sbjct: 235 SEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNENFADW 294

Query: 276 RRLYSASKSHVASGSKIIVASRSEKIAS-FGTTQALRVKFFTQEAYWYFFKVRTFGSINA 334
             L      H A GS+I+V +RS+++AS         ++  +    W  F    FG+   
Sbjct: 295 -DLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEP 353

Query: 335 VEHPKLASVAMDIARELNGCFMGASIYSGLLKANINFQFWRRALA 379
             + ++  +A  I  +  G  +      G+L+       W R L+
Sbjct: 354 CLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLS 398



>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
          Length = 852

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 195 VLPIIGPGKVGKSTLIEHACDDERVRNHFSQIVL------FNDDDLEDANILTLRDSGV- 247
           ++  +G G +GK+T+ +   +D+ + + F + +       F ++ +  + +  L D+ V 
Sbjct: 184 IMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNLGDASVG 243

Query: 248 ------IKHQNHATGGKRILIIIELTRDINEGAWRRLYSASKSHVASGSKIIVASRSEKI 301
                 ++       GKR LI+++   D N   W ++Y         G  +IV +RSE +
Sbjct: 244 DDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPR--GQGGSVIVTTRSESV 301

Query: 302 A---SFGTTQALRVKFFTQEAYWYFFKVRTFGSINAV-EHPKLASVAMDIARELNGCFMG 357
           A        +  R +  + +  W  F    F + +   E P+L  V  +I  +  G  + 
Sbjct: 302 AKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLT 361

Query: 358 ASIYSGLLKANIN-FQFWRR 376
                GLL    + +  WRR
Sbjct: 362 IKAVGGLLLCKDHVYHEWRR 381



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,024,774
Number of extensions: 468935
Number of successful extensions: 1481
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1482
Number of HSP's successfully gapped: 3
Length of query: 506
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,282,721
Effective search space: 3337936563
Effective search space used: 3337936563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)