Os07g0117000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os07g0117000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.74 | 0.742 | 7.97 | 3.17 | 2.17 | -1.22 | 0.599 | -3.89 | 1.2 | 8.73 | 1002 | 12913 | -- | -- |
| 267.49 | 0.762 | 8.03 | 2.17 | 2.14 | -1.41 | 0.616 | -- | 1.19 | 8.76 | 998.2 | 25239 | -- | -- |
| 250.9 | 0.738 | 7.97 | 3.18 | 2.17 | -1.22 | -- | -3.91 | 1.21 | 8.74 | 1002 | 12810 | -- | -- |
| 268.6 | 0.763 | 8.03 | 2.18 | 2.16 | -1.41 | -- | -- | 1.16 | 8.75 | 998 | 25700 | -- | -- |
| 517.02 | 1.06 | 8.03 | 3.13 | -- | -1.26 | -- | -3.67 | 1.21 | -- | 1002 | 12789 | -- | -- |
| 312 | 0.828 | 8.03 | 2.64 | 2.17 | -- | 0.571 | -- | 1.12 | 8.72 | -- | -- | -- | -- |
| 313.08 | 0.829 | 8.03 | 2.66 | 2.17 | -- | -- | -- | 1.12 | 8.72 | -- | -- | -- | -- |
| 532.51 | 1.07 | 8.09 | 2.17 | -- | -1.45 | -- | -- | 1.17 | -- | 997.8 | 25899 | -- | -- |
| 303.06 | 0.811 | 8.2 | -- | 2.17 | -2.67 | -- | -- | 0.37 | 8.75 | 996.1 | 47520 | -- | -- |
| 579.07 | 1.12 | 8.09 | 2.67 | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
| 499.98 | 1.05 | 8.1 | -- | 2.18 | -- | -- | -- | 0.828 | 8.63 | -- | -- | -- | -- |
| 570.11 | 1.11 | 8.26 | -- | -- | -2.66 | -- | -- | 0.389 | -- | 995.9 | 47520 | -- | -- |
| 766.7 | 1.29 | 8.16 | -- | -- | -- | -- | -- | 0.847 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.54 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 3 | 250.59 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 7 | 250.62 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 8 | 250.62 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 10 | 250.65 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 61 | 251.13 | atmosphere | 1000 | 14400 | > th | dose dependent | sin | 10 | NA |
| 149 | 251.38 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 22 | 19 |
| 185 | 251.44 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 10 | 20 |
| 237 | 251.51 | atmosphere | 1000 | 14400 | > th | dose dependent | no | NA | NA |
| 266 | 251.56 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 271 | 251.57 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 344 | 251.78 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 388 | 251.96 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 443 | 252.13 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 461 | 252.18 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 475 | 252.21 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 532 | 252.32 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 642 | 252.59 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 665 | 252.62 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 11 | NA |