BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0117000 Os07g0117000|AK069420
         (590 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14470.1  | chr3:4857940-4861104 FORWARD LENGTH=1055            50   3e-06

>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
          Length = 1054

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 136/328 (41%), Gaps = 36/328 (10%)

Query: 130 VIVEEADERFITNQAMLQKLNILRKEMYRGYYTLICFRCHNNEEDNVKDREVSYYFTPSK 189
            ++ +A+E+ ITN  + + +N LR  +Y     L        ++   +   ++     S 
Sbjct: 51  AVLIDAEEKQITNPVVEKWVNELRDVVYHAEDAL--------DDIATEALRLNIGAESSS 102

Query: 190 LNPAKRVR-------FCTGSGQTLRDQLQQVLGSLQVTLEDMREFLMFFNSCPHLCRQPY 242
            N  +++R       F  G+ + L  +L++V   L+  L   R  L        + +Q  
Sbjct: 103 SNRLRQLRGRMSLGDFLDGNSEHLETRLEKVTIRLE-RLASQRNILGLKELTAMIPKQRL 161

Query: 243 SMHLLLDRC-LFGRQMETEHIMNFLLKEDIPSAENLGVLPIIGPGKVGKSTLIEHACEDE 301
               L+D   +FGR  + + IM FL+ E+      + V+ I+G G VGK+TL +    D+
Sbjct: 162 PTTSLVDESEVFGRDDDKDEIMRFLIPEN-GKDNGITVVAIVGIGGVGKTTLSQLLYNDQ 220

Query: 302 RVRNRFSQIV---CFNDDDVGHANM-----VALRDCGV-------IKHKNHSIG-GDRML 345
            VR+ F   V      + DV          V  R C         +K K    G G   L
Sbjct: 221 HVRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFL 280

Query: 346 IIIELMGDIDEGVWGRLYSASKISVAVGSKIIVTSRSDKIVSFG-TTQVLRVNFFTQEAY 404
           ++++ + + +   W  L     I  A GS+I+VT+RS ++ S      V  +   +    
Sbjct: 281 LVLDDLWNENFADWD-LLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDC 339

Query: 405 WYFFKVRTFGSLDAEEHPKLASLAMDIA 432
           W  F    FG+ +   + ++  LA  I 
Sbjct: 340 WSLFMKTVFGNQEPCLNREIGDLAERIV 367



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,890,737
Number of extensions: 474022
Number of successful extensions: 1453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1453
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 486
Effective length of database: 8,255,305
Effective search space: 4012078230
Effective search space used: 4012078230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)