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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0115700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0263) R2 : 0.00233
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0571 (0.0553) R2dN8 : 0.00301 R2N8 : 0.00233
σ : 0.495
deviance : 112.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.77 0.476 3.24 -0.444 0.326 0.371 0.336 -0.802 -0.139 7.45 25 1554 -- --
103.46 0.474 3.22 -0.212 0.317 0.291 0.342 -- -0.0737 7.39 24.31 1509 -- --
103.08 0.473 3.24 -0.438 0.326 0.373 -- -0.81 -0.14 7.51 25 1553 -- --
103.77 0.474 3.22 -0.207 0.316 0.292 -- -- -0.0742 7.55 24.3 1509 -- --
108.31 0.485 3.25 -0.408 -- 0.376 -- -0.691 -0.129 -- 25 1421 -- --
106.38 0.484 3.19 -0.101 0.321 -- 0.354 -- 0.0427 7.37 -- -- -- --
106.72 0.484 3.19 -0.0926 0.321 -- -- -- 0.0422 7.43 -- -- -- --
108.93 0.486 3.23 -0.212 -- 0.332 -- -- -0.0743 -- 24.5 1409 -- --
104.75 0.477 3.21 -- 0.314 0.248 -- -- -0.0285 7.57 24.5 1502 -- --
112.21 0.495 3.2 -0.0875 -- -- -- -- 0.0474 -- -- -- -- --
106.94 0.484 3.19 -- 0.32 -- -- -- 0.0525 7.45 -- -- -- --
109.87 0.488 3.21 -- -- 0.261 -- -- -0.0262 -- 24.4 1407 -- --
112.41 0.495 3.2 -- -- -- -- -- 0.0571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.87 atmosphere 1010 90 < th dose dependent rect. 4 1
2 101.90 atmosphere 1010 30 < th dose dependent rect. 4 3
3 102.02 wind 1 90 < th dose dependent rect. 4 9
5 102.06 wind 1 90 < th dose dependent rect. 4 18
7 102.08 temperature 25 1440 > th dose independent rect. 8 7
10 102.10 humidity 70 1440 < th dose independent rect. 8 2
12 102.11 radiation 1 10 > th dose independent rect. 5 1
23 102.12 temperature 25 1440 > th dose independent rect. 3 13
31 102.16 radiation 10 30 < th dose independent rect. 3 23
38 102.22 temperature 25 1440 > th dose independent rect. 11 2
44 102.24 temperature 25 1440 < th dose independent rect. 3 12
63 102.31 humidity 70 1440 > th dose independent rect. 8 2
64 102.31 temperature 25 1440 < th dose independent rect. 8 6
70 102.33 atmosphere 1010 10 < th dose independent rect. 5 2
117 102.40 temperature 25 1440 > th dose independent sin 2 NA
120 102.41 humidity 70 1440 > th dose independent rect. 3 7
121 102.41 humidity 70 1440 > th dose independent rect. 24 10
122 102.41 humidity 70 1440 > th dose independent rect. 21 13
134 102.43 temperature 20 720 > th dose dependent rect. 3 2
136 102.43 humidity 80 1440 < th dose dependent rect. 20 15
153 102.44 humidity 80 43200 < th dose dependent rect. 7 1
177 102.52 temperature 25 1440 < th dose independent sin 2 NA
179 102.52 humidity 70 43200 > th dose independent rect. 1 8
198 102.54 temperature 25 1440 > th dose independent rect. 3 19
199 102.55 humidity 70 1440 > th dose independent sin 7 NA
223 102.56 temperature 25 1440 > th dose independent rect. 20 20
234 102.58 temperature 25 1440 > th dose independent rect. 8 14
245 102.59 wind 1 90 > th dose dependent rect. 23 11
248 102.60 radiation 10 30 < th dose independent rect. 4 9
250 102.60 temperature 25 1440 < th dose independent rect. 3 20
285 102.64 temperature 25 1440 < th dose independent rect. 20 20
311 102.67 humidity 80 30 < th dose dependent rect. 9 2
317 102.68 temperature 25 1440 < th dose independent rect. 8 15
321 102.69 radiation 10 30 < th dose independent rect. 4 3
334 102.70 humidity 70 43200 > th dose independent rect. 7 2
347 102.71 radiation 10 30 < th dose independent rect. 4 6
357 102.72 wind 3 270 > th dose independent rect. 3 1
369 102.72 humidity 80 1440 < th dose dependent rect. 8 2
387 102.73 temperature 20 1440 > th dose dependent rect. 11 1
388 102.73 temperature 30 1440 < th dose dependent rect. 11 1
395 102.74 temperature 25 1440 > th dose independent rect. 8 22
436 102.78 radiation 40 720 < th dose independent rect. 15 9
481 102.80 temperature 10 720 > th dose dependent rect. 3 2
492 102.81 temperature 25 1440 < th dose independent rect. 8 22
504 102.82 wind 1 90 < th dose dependent sin 23 NA
505 102.82 temperature 20 10 > th dose dependent rect. 5 1
508 102.83 humidity 70 1440 < th dose independent sin 8 NA
509 102.83 temperature 25 90 < th dose independent rect. 4 1
524 102.84 temperature 25 1440 > th dose independent no NA NA
569 102.86 radiation 10 30 > th dose independent rect. 12 23
577 102.87 wind 1 90 < th dose independent rect. 4 9
587 102.87 humidity 80 1440 < th dose dependent rect. 5 5
613 102.89 atmosphere 1015 43200 > th dose independent rect. 1 1
623 102.90 temperature 25 1440 < th dose independent no NA NA
624 102.90 humidity 70 90 < th dose independent rect. 8 2
637 102.90 wind 3 90 < th dose dependent rect. 4 2
638 102.90 temperature 20 90 > th dose dependent rect. 4 2
703 102.95 humidity 70 43200 < th dose independent rect. 1 8
716 102.96 wind 1 90 < th dose independent rect. 4 18
723 102.96 temperature 25 1440 > th dose independent rect. 13 23
726 102.96 humidity 80 1440 < th dose dependent sin 8 NA
739 102.97 temperature 30 1440 < th dose dependent rect. 10 4
760 102.99 temperature 25 1440 < th dose independent rect. 13 23
762 102.99 humidity 60 4320 < th dose dependent rect. 9 1
806 103.02 humidity 70 10 < th dose independent rect. 9 2
830 103.03 temperature 20 90 > th dose independent rect. 4 2
838 103.03 radiation 20 30 < th dose dependent rect. 3 23
839 103.04 wind 1 270 < th dose independent rect. 2 3
847 103.04 radiation 40 10 > th dose dependent rect. 10 1
875 103.07 atmosphere 1015 43200 < th dose independent rect. 1 1
876 103.07 humidity 50 14400 < th dose independent rect. 10 2
884 103.08 humidity 50 14400 > th dose independent rect. 11 1
887 103.08 wind 7 720 < th dose independent rect. 17 5
892 103.08 radiation 10 30 > th dose independent rect. 17 17
900 103.09 wind 5 90 < th dose independent rect. 4 2
906 103.09 wind 1 90 > th dose independent rect. 23 11
915 103.10 radiation 10 30 > th dose independent rect. 15 19
924 103.11 humidity 70 43200 < th dose independent rect. 7 2
928 103.11 wind 9 270 < th dose dependent rect. 17 13
932 103.12 wind 5 270 < th dose independent rect. 17 13
944 103.13 atmosphere 995 90 > th dose independent rect. 6 22
945 103.13 radiation 40 30 > th dose dependent sin 11 NA
949 103.13 wind 1 90 > th dose dependent rect. 1 9
957 103.14 wind 9 4320 > th dose dependent rect. 10 4
959 103.15 radiation 10 30 > th dose independent sin 10 NA
960 103.15 radiation 10 30 < th dose independent sin 10 NA
995 103.17 radiation 10 30 < th dose independent rect. 4 13
1000 103.17 wind 7 4320 > th dose dependent rect. 10 6