Os07g0108100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os07g0108100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.14 | 0.578 | 5.7 | 2.15 | 1.61 | -2.89 | 0.506 | 1.13 | -0.55 | 7.23 | 9.268 | 3889 | -- | -- |
| 152.31 | 0.575 | 5.74 | 1.92 | 1.61 | -2.95 | 0.464 | -- | -0.615 | 7.2 | 9.163 | 3915 | -- | -- |
| 151.81 | 0.574 | 5.71 | 2.16 | 1.62 | -2.9 | -- | 1.1 | -0.55 | 7.2 | 9.154 | 3888 | -- | -- |
| 152.94 | 0.576 | 5.75 | 1.91 | 1.62 | -2.94 | -- | -- | -0.62 | 7.19 | 9.297 | 3897 | -- | -- |
| 258.42 | 0.749 | 5.73 | 2.1 | -- | -2.96 | -- | 1.39 | -0.453 | -- | 17.6 | 2089 | -- | -- |
| 303.96 | 0.817 | 5.87 | 0.6 | 1.65 | -- | 0.69 | -- | -1.19 | 7.78 | -- | -- | -- | -- |
| 305.32 | 0.818 | 5.87 | 0.617 | 1.66 | -- | -- | -- | -1.19 | 7.74 | -- | -- | -- | -- |
| 260.95 | 0.752 | 5.77 | 1.74 | -- | -3.04 | -- | -- | -0.544 | -- | 16.3 | 2098 | -- | -- |
| 214.73 | 0.682 | 5.82 | -- | 1.5 | -1.82 | -- | -- | -0.929 | 7.22 | 20.2 | 2265 | -- | -- |
| 453.4 | 0.995 | 5.91 | 0.638 | -- | -- | -- | -- | -1.17 | -- | -- | -- | -- | -- |
| 315.35 | 0.831 | 5.89 | -- | 1.66 | -- | -- | -- | -1.26 | 7.72 | -- | -- | -- | -- |
| 259.21 | 0.75 | 5.84 | -- | -- | -2.83 | -- | -- | -0.824 | -- | 19.28 | 570 | -- | -- |
| 464.13 | 1.01 | 5.93 | -- | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 2 | 145.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 3 | 146.00 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 5 | 146.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 6 | 146.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 9 | 146.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 11 | 146.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 16 | 146.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 46 | 147.11 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 49 | 147.40 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 79 | 147.76 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 138 | 148.50 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 176 | 148.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 186 | 148.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 191 | 148.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 217 | 149.01 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 262 | 149.21 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 473 | 150.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 480 | 150.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 816 | 151.64 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 865 | 151.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 892 | 151.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 23 |