BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0108100 Os07g0108100|Os07g0108100
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29090.1 | chr1:10163103-10164385 REVERSE LENGTH=356 62 2e-10
AT3G49340.1 | chr3:18293347-18294577 REVERSE LENGTH=342 60 8e-10
AT2G34080.1 | chr2:14393431-14394777 REVERSE LENGTH=346 59 1e-09
AT1G29110.1 | chr1:10171683-10173071 FORWARD LENGTH=335 56 1e-08
AT2G27420.1 | chr2:11726311-11727519 REVERSE LENGTH=349 54 6e-08
AT4G11310.1 | chr4:6883594-6885318 FORWARD LENGTH=365 51 3e-07
AT1G29080.1 | chr1:10157494-10158674 REVERSE LENGTH=347 49 1e-06
>AT1G29090.1 | chr1:10163103-10164385 REVERSE LENGTH=356
Length = 355
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 81 MKTSDDDERMNLTEEEEAALKVRHQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNA 140
+K S R+ E + HQ+WM +F+R Y DE EK RF++FK ++F EKFN
Sbjct: 27 LKVSQATSRVTF---HEPIVAEHHQQWMTRFSRVYSDELEKQMRFDVFKKNLKFIEKFNK 83
Query: 141 EQVKEHGYCKCILGTTQFADLTLEEF 166
+ + + LG +FAD T EEF
Sbjct: 84 KGDRTYK-----LGVNEFADWTREEF 104
>AT3G49340.1 | chr3:18293347-18294577 REVERSE LENGTH=342
Length = 341
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 97 EAALKVRHQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNAEQVKEHGYCKCILGTT 156
EA+ +H++WM++FNR Y D++EK RFEIF + ++F E N K + L
Sbjct: 28 EASAVEKHEQWMSRFNRVYSDDSEKTSRFEIFTNNLKFVESINMNTNKTY-----TLDVN 82
Query: 157 QFADLTLEEF 166
+F+DLT EEF
Sbjct: 83 EFSDLTDEEF 92
>AT2G34080.1 | chr2:14393431-14394777 REVERSE LENGTH=346
Length = 345
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 97 EAALKVRHQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNAEQVKEHGYCKCILGTT 156
E ++ +H++WM +F+REY+DE EK R ++FK ++F E FN + K + LG
Sbjct: 32 EQSMVDKHEQWMARFSREYRDELEKNMRRDVFKKNLKFIENFNKKGNKSYK-----LGVN 86
Query: 157 QFADLTLEEF 166
+FAD T EEF
Sbjct: 87 EFADWTNEEF 96
>AT1G29110.1 | chr1:10171683-10173071 FORWARD LENGTH=335
Length = 334
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 104 HQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNAEQVKEHGYCKCILGTTQFADLTL 163
HQ+WM +F+R YKDE+EK R ++FK ++F E FN G LG +F D
Sbjct: 38 HQQWMTQFSRVYKDESEKEMRLKVFKKNLKFIENFN-----NMGNQSYTLGVNEFTDWKT 92
Query: 164 EEF 166
EEF
Sbjct: 93 EEF 95
>AT2G27420.1 | chr2:11726311-11727519 REVERSE LENGTH=349
Length = 348
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 97 EAALKVRHQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNAEQVKEHGYCKCILGTT 156
EA+ +H++WM +FNR Y DE EK RF IFK + F + FN + +
Sbjct: 28 EASAIEKHEQWMARFNRVYSDETEKRNRFNIFKKNLEFVQNFNMNNKITYK-----VDIN 82
Query: 157 QFADLTLEEF 166
+F+DLT EEF
Sbjct: 83 EFSDLTDEEF 92
>AT4G11310.1 | chr4:6883594-6885318 FORWARD LENGTH=365
Length = 364
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 67 ATNIAEEPQPLPKLMKTSDDDERMNLTEEEEAALKVRHQEWMNKFNREYKDEAEKAYRFE 126
A IA + + + DD+ R++ + EA+L + WM K + Y AEK R
Sbjct: 14 AMVIASCATAIDMSVVSYDDNNRLHSVFDAEASLIF--ESWMVKHGKVYGSVAEKERRLT 71
Query: 127 IFKSTVRFAEKFNAEQVKEHGYCKCILGTTQFADLTLEEF 166
IF+ +RF NAE + LG T FADL+L E+
Sbjct: 72 IFEDNLRFINNRNAENLSYR------LGLTGFADLSLHEY 105
>AT1G29080.1 | chr1:10157494-10158674 REVERSE LENGTH=347
Length = 346
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 81 MKTSDDDERMNLTEEEEAALKVRHQEWMNKFNREYKDEAEKAYRFEIFKSTVRFAEKFNA 140
+K S+ R+ L + +++ HQ+WM +F+R Y DE EK R ++ ++F E FN
Sbjct: 18 LKISEATSRVALYKP--SSIVDYHQQWMIQFSRVYDDEFEKQLRLQVLTENLKFIESFNN 75
Query: 141 EQVKEHGYCKCILGTTQFADLTLEEF 166
+ + LG +F D T EEF
Sbjct: 76 MGNQSYK-----LGVNEFTDWTKEEF 96
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,497,646
Number of extensions: 136732
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 8
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)