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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0102900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0254) R2 : 0.968
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -6.28 (0.0535) R2dN8 : 1.25 R2N8 : 0.968
σ : 0.479
deviance : 105.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.22 0.426 9.58 0.768 0.24 -0.465 0.0896 -1.16 -6.26 21.6 64 5300 -- --
83.69 0.426 9.58 0.777 0.228 -0.654 -0.0707 -- -6.31 21.9 56 5440 -- --
82.24 0.422 9.58 0.765 0.241 -0.464 -- -1.16 -6.26 21.7 64.3 5300 -- --
83.61 0.426 9.58 0.799 0.231 -0.689 -- -- -6.3 21.7 55.57 5441 -- --
84.98 0.429 9.56 0.739 -- -0.542 -- -1.39 -6.23 -- 61.3 7428 -- --
90.62 0.446 9.56 0.673 0.205 -- -0.0387 -- -6.2 21.6 -- -- -- --
90.62 0.446 9.56 0.674 0.206 -- -- -- -6.2 21.5 -- -- -- --
86.73 0.434 9.57 0.835 -- -0.676 -- -- -6.27 -- 54.62 5532 -- --
88.58 0.438 9.57 -- 0.239 -0.812 -- -- -6.26 21.3 67.5 30821 -- --
93.12 0.451 9.55 0.676 -- -- -- -- -6.2 -- -- -- -- --
102.61 0.474 9.57 -- 0.207 -- -- -- -6.28 21.8 -- -- -- --
91.03 0.444 9.58 -- -- -0.781 -- -- -6.3 -- 66 30582 -- --
105.16 0.479 9.57 -- -- -- -- -- -6.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.24 temperature 25.0 90 > th dose independent rect. 1 3
2 75.56 temperature 25.0 90 > th dose dependent rect. 2 2
4 76.35 radiation 1.0 14400 < th dose dependent rect. 3 1
5 76.74 wind 1.0 10 < th dose independent rect. 2 1
9 76.80 wind 3.0 10 < th dose dependent rect. 2 1
14 76.87 humidity 90.0 10 > th dose independent rect. 2 1
18 76.89 wind 9.0 1440 < th dose independent rect. 3 1
19 76.89 temperature 10.0 1440 > th dose independent rect. 3 1
22 76.89 temperature 30.0 1440 < th dose independent rect. 3 1
27 76.89 humidity 50.0 1440 > th dose independent rect. 3 1
36 76.89 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 76.89 radiation 1.0 1440 < th dose independent rect. 3 1
57 76.89 temperature 10.0 1440 > th dose independent rect. 4 23
68 76.96 humidity 80.0 30 > th dose dependent rect. 2 1
69 76.96 atmosphere 1010.0 30 < th dose dependent rect. 2 1
72 76.99 temperature 20.0 10 > th dose independent rect. 2 1
85 77.09 temperature 10.0 30 > th dose dependent rect. 2 1
93 77.12 temperature 10.0 30 > th dose independent rect. 2 1
95 77.12 temperature 30.0 30 < th dose independent rect. 2 1
96 77.12 humidity 50.0 30 > th dose independent rect. 2 1
99 77.12 atmosphere 995.0 30 > th dose independent rect. 2 1
100 77.12 atmosphere 1010.0 30 < th dose independent rect. 2 1
102 77.12 radiation 1.0 30 < th dose independent rect. 2 1
107 77.12 precipitation 0.1 30 < th dose independent rect. 2 1
108 77.12 temperature 10.0 30 > th dose independent rect. 3 23
109 77.12 radiation 1.0 30 < th dose dependent rect. 2 1
114 77.12 precipitation 0.1 30 < th dose dependent rect. 2 1
122 77.21 atmosphere 995.0 30 > th dose dependent rect. 2 1
131 77.32 temperature 30.0 30 < th dose dependent rect. 2 1
163 77.53 atmosphere 995.0 30 > th dose independent rect. 3 23
175 77.72 wind 1.0 30 > th dose independent rect. 2 1
180 78.10 precipitation 0.1 30 < th dose independent rect. 3 23
181 78.10 precipitation 0.1 30 < th dose dependent rect. 3 23
208 79.84 wind 9.0 30 < th dose independent rect. 3 23
210 79.96 temperature 30.0 30 < th dose independent rect. 3 23
215 80.48 humidity 50.0 30 > th dose independent rect. 3 23
235 81.00 wind 3.0 30 < th dose dependent rect. 2 9
257 81.54 temperature 25.0 1440 > th dose independent rect. 1 2
258 81.54 wind 3.0 30 < th dose dependent rect. 2 5
260 81.57 temperature 25.0 270 > th dose independent rect. 23 9
267 81.72 wind 1.0 30 < th dose independent rect. 9 18
276 81.87 wind 1.0 10 < th dose independent rect. 2 7
288 82.06 temperature 25.0 1440 > th dose dependent rect. 1 1
295 82.10 wind 3.0 30 < th dose dependent rect. 10 17
297 82.12 humidity 50.0 4320 > th dose independent rect. 15 1
304 82.16 wind 1.0 10 < th dose independent rect. 6 22
309 82.20 wind 1.0 30 < th dose independent rect. 13 14
325 82.30 humidity 50.0 4320 < th dose independent rect. 15 1
328 82.31 atmosphere 1015.0 30 < th dose independent rect. 3 23
337 82.38 humidity 50.0 4320 > th dose independent rect. 14 3
345 82.41 humidity 90.0 10 > th dose independent rect. 24 3
358 82.46 humidity 50.0 4320 > th dose independent rect. 13 15
361 82.47 temperature 20.0 10 > th dose independent rect. 2 3
437 82.64 humidity 70.0 720 > th dose independent rect. 19 8
461 82.73 humidity 50.0 4320 < th dose independent rect. 14 3
470 82.77 temperature 25.0 1440 < th dose independent rect. 1 1
471 82.77 humidity 60.0 4320 < th dose dependent rect. 15 1
489 82.87 humidity 50.0 4320 > th dose independent sin 15 NA
533 82.91 humidity 50.0 4320 < th dose dependent sin 12 NA
534 82.91 wind 3.0 4320 < th dose dependent rect. 9 1
548 82.95 wind 3.0 10 < th dose dependent rect. 22 5
551 82.97 humidity 60.0 4320 < th dose dependent rect. 14 4
578 83.04 humidity 60.0 4320 < th dose dependent sin 15 NA
579 83.05 humidity 80.0 4320 < th dose independent rect. 20 1
580 83.05 humidity 80.0 4320 < th dose dependent sin 10 NA
582 83.06 humidity 50.0 4320 < th dose independent sin 14 NA
597 83.07 humidity 80.0 4320 < th dose dependent rect. 19 15
628 83.14 humidity 60.0 1440 > th dose dependent rect. 9 2
629 83.14 wind 3.0 10 < th dose dependent rect. 2 17
654 83.17 wind 3.0 30 < th dose dependent rect. 6 21
655 83.18 humidity 80.0 4320 > th dose independent rect. 20 2
695 83.23 radiation 40.0 1440 > th dose independent rect. 9 1
697 83.23 temperature 20.0 10 > th dose independent rect. 2 5
716 83.29 temperature 25.0 720 > th dose dependent rect. 19 7
745 83.36 wind 3.0 30 < th dose dependent rect. 15 12
789 83.45 humidity 70.0 4320 > th dose independent rect. 9 1
862 83.55 wind 3.0 4320 < th dose independent rect. 9 1
884 83.59 wind 1.0 10 > th dose independent sin 17 NA
886 83.59 humidity 70.0 4320 < th dose independent rect. 9 1
934 83.61 humidity 80.0 4320 < th dose dependent rect. 18 9
958 83.64 radiation 40.0 1440 < th dose independent rect. 9 2
960 83.64 humidity 50.0 4320 > th dose independent rect. 3 14
962 83.64 humidity 50.0 4320 > th dose independent rect. 22 19
971 83.65 humidity 50.0 4320 > th dose independent rect. 7 10
979 83.66 temperature 25.0 14400 > th dose independent rect. 10 1
989 83.67 temperature 25.0 14400 < th dose independent rect. 10 1