BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0102900 Os07g0102900|J090035O08
(257 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 57 9e-09
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 53 1e-07
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 49 3e-06
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 76 IITMLETIRRKVMVRIKDQIANSNRWNTVICPGILKKLNVYIAEFAFCHAISN-GAEAYE 134
++ M + +R + ++ NR V + KL ++ + + + I+ ++++
Sbjct: 567 VMLMFDELRSSFDKSLSSIYSSLNR-GVVYTEPFMDKLEEFMTD-SIPYVITQLERDSFK 624
Query: 135 VKHHEHR--FTVQLDKKECSCRYWQLSGLPCPHAIACIFYKTSQLDGYIADCYSVETFKK 192
V + + VQL+ C+CR +Q PC HA+A Y+ +CY+VE + K
Sbjct: 625 VSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCK 684
Query: 193 IYAHCLQPLEGMSSWPEDDRQPLNAP 218
YA P+ +++WPED R P P
Sbjct: 685 TYAATFSPVPDVAAWPEDCRVPTLFP 710
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 87 VMVRIKDQIANSNRWNTVICPGILKKLNVYIAEFAFCHAISNGAEAYEVKHHEHRFTVQL 146
VM ++++ +S+ W I P V +A + ++ VQL
Sbjct: 602 VMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQSNDSTSG-------IVQL 654
Query: 147 DKKECSCRYWQLSGLPCPHAIA-CIFYKTSQLDGYIADCYSVETFKKIYAHCLQPLEGMS 205
+ C+C +Q + PC HA+A C K + L Y+ DCY+VE + K Y+ P+ +S
Sbjct: 655 NDTTCTCGEFQKNKFPCLHALAVCDELKINPLQ-YVDDCYTVERYHKTYSAKFSPVPELS 713
Query: 206 SWPE 209
+WPE
Sbjct: 714 AWPE 717
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 144 VQLDKKECSCRYWQLSGLPCPHAIA-CIFYKTSQLDGYIADCYSVETFKKIYAHCLQPLE 202
VQL C+C +Q PC HA+A C K + L Y+ DCY++E K+ YA +
Sbjct: 645 VQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQ-YVDDCYTLERLKRTYATIFSHVP 703
Query: 203 GMSSWPEDDRQP 214
MS+WPE P
Sbjct: 704 EMSAWPEASGVP 715
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,686,206
Number of extensions: 229053
Number of successful extensions: 684
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)