Os06g0728000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG1 protein (HMGB1).
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Os06g0728000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG1 protein (HMGB1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.9 | 0.253 | 16.6 | 0.439 | 0.907 | -0.724 | 0.0902 | -1.5 | -0.563 | 18.7 | 10.03 | 277 | -- | -- |
| 30.34 | 0.257 | 16.6 | 0.656 | 0.889 | -0.702 | -0.204 | -- | -0.51 | 18.7 | 11.02 | 276 | -- | -- |
| 28.92 | 0.25 | 16.6 | 0.446 | 0.907 | -0.721 | -- | -1.44 | -0.561 | 18.7 | 9.996 | 276 | -- | -- |
| 30.39 | 0.257 | 16.6 | 0.667 | 0.901 | -0.756 | -- | -- | -0.502 | 18.7 | 12.14 | 277 | -- | -- |
| 57.74 | 0.354 | 16.6 | 0.329 | -- | -0.458 | -- | -1.39 | -0.623 | -- | 8.563 | 2901 | -- | -- |
| 36.26 | 0.282 | 16.6 | 0.5 | 0.718 | -- | -0.247 | -- | -0.608 | 19.2 | -- | -- | -- | -- |
| 36.42 | 0.283 | 16.6 | 0.505 | 0.717 | -- | -- | -- | -0.609 | 19.2 | -- | -- | -- | -- |
| 58.79 | 0.357 | 16.6 | 0.661 | -- | -0.533 | -- | -- | -0.523 | -- | 12.35 | 1386 | -- | -- |
| 40.93 | 0.298 | 16.6 | -- | 0.814 | -0.448 | -- | -- | -0.614 | 18.9 | 10.16 | 260 | -- | -- |
| 63.68 | 0.373 | 16.6 | 0.492 | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
| 43.13 | 0.307 | 16.6 | -- | 0.712 | -- | -- | -- | -0.665 | 19.3 | -- | -- | -- | -- |
| 67.01 | 0.381 | 16.6 | -- | -- | 0.3 | -- | -- | -0.718 | -- | 24.6 | 406 | -- | -- |
| 70.06 | 0.391 | 16.6 | -- | -- | -- | -- | -- | -0.676 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.45 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 21 | 27.32 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 44 | 27.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 82 | 28.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 108 | 28.62 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 141 | 28.64 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 154 | 28.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 156 | 28.72 | temperature | 30 | 720 | > th | dose dependent | sin | 7 | NA |
| 164 | 28.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 182 | 28.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 187 | 28.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 190 | 28.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 194 | 28.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 209 | 28.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 217 | 28.91 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 221 | 28.92 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 222 | 28.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 236 | 28.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 245 | 28.98 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 307 | 29.05 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 9 |
| 326 | 29.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 342 | 29.10 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 6 |
| 348 | 29.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 372 | 29.16 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 15 |
| 389 | 29.19 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 411 | 29.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 430 | 29.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 444 | 29.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 459 | 29.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 483 | 29.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 486 | 29.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 498 | 29.33 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 528 | 29.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 553 | 29.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 597 | 29.41 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 23 |
| 660 | 29.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 672 | 29.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 684 | 29.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 746 | 29.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 754 | 29.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 773 | 29.55 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 23 |
| 789 | 29.56 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 828 | 29.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 839 | 29.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 922 | 29.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 948 | 29.67 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 991 | 29.70 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |