BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0728000 Os06g0728000|AK062226
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20693.1  | chr1:7177282-7178487 FORWARD LENGTH=145             75   2e-14
AT1G20696.2  | chr1:7179825-7181193 FORWARD LENGTH=148             72   1e-13
AT3G51880.2  | chr3:19247241-19248491 REVERSE LENGTH=186           70   6e-13
AT2G17560.1  | chr2:7642486-7643468 REVERSE LENGTH=139             69   1e-12
AT4G35570.1  | chr4:16887363-16888184 REVERSE LENGTH=126           56   8e-09

>AT1G20693.1 | chr1:7177282-7178487 FORWARD LENGTH=145
          Length = 144

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 1   MKGAKSKGAAKPDAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXXXXXXXX 60
           MKGAKSK   +  +KL+V                   DPNKPKR  SA            
Sbjct: 1   MKGAKSKTETR-SSKLSV---TKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETF 56

Query: 61  XXXXXXXXSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNK 112
                   SVA VGKAAGD+WKSL++++KAPYVAKA K K EY K I AYNK
Sbjct: 57  KKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108



>AT1G20696.2 | chr1:7179825-7181193 FORWARD LENGTH=148
          Length = 147

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 47/75 (62%)

Query: 38  DPNKPKRAPSAXXXXXXXXXXXXXXXXXXXXSVAAVGKAAGDRWKSLTEADKAPYVAKAN 97
           DPNKPKR  SA                    SVAAVGKA G++WKSL++++KAPYVAKA+
Sbjct: 31  DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90

Query: 98  KLKAEYNKAIAAYNK 112
           K K EY K + AYNK
Sbjct: 91  KRKVEYEKNMKAYNK 105



>AT3G51880.2 | chr3:19247241-19248491 REVERSE LENGTH=186
          Length = 185

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query: 38  DPNKPKRAPSAXXXXXXXXXXXXXXXXXXXXSVAAVGKAAGDRWKSLTEADKAPYVAKAN 97
           DPNKPKRAPSA                    +V+AVGKA G +WKS+++A+KAPY  KA 
Sbjct: 49  DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108

Query: 98  KLKAEYNKAIAAYNKG 113
           K KAEY K + AYNK 
Sbjct: 109 KRKAEYEKQMDAYNKN 124



>AT2G17560.1 | chr2:7642486-7643468 REVERSE LENGTH=139
          Length = 138

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 42/74 (56%)

Query: 38  DPNKPKRAPSAXXXXXXXXXXXXXXXXXXXXSVAAVGKAAGDRWKSLTEADKAPYVAKAN 97
           DPN+PKR PSA                    SVA VGKAAG RWK++T+ DKAPYVAKA 
Sbjct: 31  DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90

Query: 98  KLKAEYNKAIAAYN 111
             K EY K +  YN
Sbjct: 91  SRKTEYIKNVQQYN 104



>AT4G35570.1 | chr4:16887363-16888184 REVERSE LENGTH=126
          Length = 125

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 38  DPNKPKRAPSAXXXXXXXXXXXXXXXXXXXXSVAAVGKAAGDRWKSLTEADKAPYVAKAN 97
           DPN+PK+ PS                     SV  VG+AAG +WK++TE ++AP+VAK+ 
Sbjct: 30  DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89

Query: 98  KLKAEYNKAIAAYN 111
             K EY   +  YN
Sbjct: 90  SKKTEYAVTMQQYN 103



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.301    0.116    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,558,325
Number of extensions: 33959
Number of successful extensions: 80
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 5
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 107 (45.8 bits)