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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0727000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0283) R2 : 0.0117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.138 (0.0595) R2dN8 : 0.0151 R2N8 : 0.0117
σ : 0.532
deviance : 129.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.69 0.518 2.07 -2.21 0.179 -105 -0.0794 -226 -0.116 2.35 14.91 1545 -- --
123.17 0.521 3.18 0.142 0.164 1.56 0.0993 -- -0.116 3.02 15.33 20 -- --
121.7 0.514 2.07 -2.2 0.178 -105 -- -226 -0.112 2.56 14.91 1540 -- --
121.98 0.514 3.18 0.177 0.175 1.54 -- -- -0.108 2.63 15.86 24 -- --
123.53 0.518 2.1 -2.13 -- -105 -- -226 -0.111 -- 14.9 1526 -- --
127.74 0.53 3.18 0.0754 0.182 -- -0.125 -- -0.133 2.22 -- -- -- --
127.79 0.529 3.18 0.0788 0.184 -- -- -- -0.133 2.47 -- -- -- --
123.75 0.518 3.18 0.183 -- 1.62 -- -- -0.103 -- 15.72 24 -- --
122.76 0.516 3.18 -- 0.177 1.45 -- -- -0.128 2.63 15.66 43 -- --
129.78 0.532 3.18 0.0866 -- -- -- -- -0.128 -- -- -- -- --
127.96 0.529 3.19 -- 0.185 -- -- -- -0.142 2.48 -- -- -- --
124.59 0.52 3.18 -- -- 1.52 -- -- -0.125 -- 15.52 46 -- --
129.98 0.532 3.18 -- -- -- -- -- -0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.97 atmosphere 1000.0 10 < th dose independent rect. 23 1
9 115.99 wind 3.0 90 < th dose dependent rect. 22 2
21 117.83 wind 3.0 30 < th dose independent rect. 23 1
23 118.07 atmosphere 1015.0 1440 < th dose independent rect. 1 7
25 118.29 atmosphere 1015.0 1440 < th dose independent rect. 1 5
28 118.38 temperature 15.0 1440 > th dose independent rect. 8 17
36 118.75 atmosphere 1000.0 10 < th dose dependent rect. 24 1
38 118.77 temperature 15.0 270 > th dose independent rect. 21 23
51 119.05 temperature 15.0 90 > th dose independent rect. 24 23
56 119.24 temperature 20.0 30 < th dose dependent rect. 6 7
61 119.34 temperature 15.0 1440 > th dose independent rect. 19 7
64 119.36 wind 9.0 1440 < th dose independent rect. 8 2
75 119.54 temperature 20.0 10 < th dose independent rect. 6 2
80 119.58 humidity 70.0 30 > th dose dependent rect. 23 1
82 119.60 temperature 20.0 10 < th dose independent rect. 6 7
108 119.77 temperature 15.0 270 > th dose independent rect. 2 23
121 119.88 temperature 15.0 4320 > th dose independent rect. 7 2
153 120.07 temperature 15.0 1440 > th dose independent rect. 17 9
157 120.08 radiation 10.0 30 < th dose independent rect. 7 1
176 120.19 atmosphere 1015.0 30 < th dose independent rect. 23 1
177 120.19 temperature 20.0 30 < th dose dependent rect. 6 2
188 120.26 atmosphere 1015.0 30 < th dose dependent rect. 23 1
192 120.30 atmosphere 1015.0 1440 < th dose independent rect. 1 2
195 120.31 wind 7.0 30 < th dose independent rect. 24 23
209 120.39 wind 9.0 30 < th dose dependent rect. 24 23
233 120.50 temperature 15.0 1440 > th dose independent rect. 8 14
243 120.54 temperature 15.0 10 > th dose independent rect. 24 23
257 120.60 wind 5.0 10 > th dose independent rect. 8 1
260 120.60 wind 5.0 10 > th dose dependent rect. 8 1
279 120.69 temperature 20.0 10 < th dose independent rect. 8 2
300 120.71 temperature 15.0 1440 > th dose independent rect. 8 7
307 120.74 atmosphere 1000.0 90 > th dose independent rect. 21 8
312 120.75 wind 9.0 1440 < th dose independent rect. 24 1
314 120.75 temperature 10.0 1440 > th dose independent rect. 24 1
317 120.75 temperature 30.0 1440 < th dose independent rect. 24 1
321 120.75 humidity 50.0 1440 > th dose independent rect. 24 1
331 120.75 atmosphere 995.0 1440 > th dose independent rect. 24 1
332 120.75 radiation 1.0 1440 < th dose independent rect. 24 1
352 120.75 precipitation 0.1 30 < th dose independent rect. 23 1
354 120.75 temperature 10.0 1440 > th dose independent rect. 1 23
358 120.75 radiation 1.0 1440 < th dose dependent rect. 24 1
363 120.75 precipitation 0.1 30 < th dose dependent rect. 23 1
364 120.75 humidity 90.0 1440 > th dose dependent rect. 11 3
367 120.76 temperature 10.0 30 > th dose independent rect. 23 1
368 120.76 temperature 30.0 30 < th dose independent rect. 23 1
369 120.76 humidity 50.0 30 > th dose independent rect. 23 1
372 120.76 atmosphere 995.0 30 > th dose independent rect. 23 1
373 120.76 radiation 1.0 30 < th dose independent rect. 23 1
382 120.76 radiation 1.0 30 < th dose dependent rect. 23 1
391 120.77 radiation 40.0 14400 < th dose dependent rect. 24 1
400 120.78 atmosphere 995.0 30 > th dose independent rect. 24 23
442 120.81 atmosphere 1015.0 30 < th dose independent rect. 24 23
445 120.82 wind 1.0 10 > th dose independent rect. 23 1
446 120.82 radiation 20.0 4320 < th dose independent rect. 1 5
465 120.86 temperature 15.0 1440 > th dose independent rect. 12 14
486 120.91 humidity 50.0 30 > th dose dependent rect. 24 11
503 120.98 temperature 10.0 30 > th dose dependent rect. 24 23
507 121.00 humidity 90.0 1440 > th dose independent rect. 11 3
523 121.06 precipitation 0.1 30 < th dose independent rect. 24 23
525 121.06 precipitation 0.1 30 < th dose dependent rect. 24 23
528 121.08 radiation 1.0 1440 > th dose independent rect. 8 1
529 121.08 precipitation 0.1 1440 < th dose independent rect. 2 1
531 121.08 temperature 15.0 270 > th dose independent rect. 17 15
532 121.08 precipitation 0.1 1440 < th dose dependent rect. 2 1
542 121.10 temperature 15.0 270 > th dose independent rect. 12 23
556 121.17 wind 9.0 30 < th dose dependent rect. 24 19
562 121.19 humidity 50.0 10 > th dose independent rect. 24 23
563 121.19 temperature 10.0 10 > th dose dependent rect. 23 1
566 121.21 wind 7.0 30 < th dose independent rect. 24 19
570 121.22 wind 1.0 90 > th dose dependent rect. 6 1
576 121.24 atmosphere 1000.0 270 > th dose independent rect. 19 9
578 121.24 temperature 15.0 90 > th dose independent rect. 24 11
584 121.26 precipitation 0.1 720 > th dose independent rect. 6 13
605 121.33 precipitation 0.1 720 > th dose dependent rect. 6 13
621 121.37 radiation 40.0 30 < th dose dependent rect. 24 11
633 121.41 temperature 15.0 270 > th dose independent rect. 8 23
651 121.46 radiation 30.0 30 < th dose independent rect. 24 11
656 121.47 humidity 60.0 4320 < th dose dependent rect. 17 3
678 121.49 wind 7.0 90 < th dose independent rect. 24 11
687 121.51 wind 3.0 10 < th dose independent rect. 20 4
690 121.51 temperature 10.0 1440 > th dose independent rect. 1 11
693 121.51 atmosphere 995.0 1440 > th dose independent rect. 1 11
716 121.55 atmosphere 1015.0 1440 < th dose independent rect. 1 9
727 121.56 precipitation 0.1 1440 < th dose independent rect. 4 15
728 121.56 precipitation 0.1 1440 < th dose dependent rect. 4 15
752 121.60 temperature 15.0 720 > th dose independent sin 18 NA
758 121.61 precipitation 0.1 30 < th dose independent rect. 11 13
761 121.61 precipitation 0.1 30 < th dose dependent rect. 11 13
762 121.61 atmosphere 1015.0 30 < th dose dependent rect. 24 23
763 121.62 temperature 15.0 270 > th dose independent rect. 13 14
783 121.64 wind 9.0 90 < th dose dependent rect. 24 11
799 121.68 temperature 15.0 270 > th dose independent sin 8 NA
801 121.68 temperature 15.0 270 > th dose independent sin 3 NA
804 121.68 humidity 50.0 30 > th dose independent rect. 24 11
805 121.68 atmosphere 995.0 30 > th dose independent rect. 24 11
806 121.68 temperature 10.0 30 > th dose independent rect. 11 13
807 121.68 atmosphere 1015.0 30 < th dose independent rect. 11 13
809 121.68 temperature 15.0 1440 < th dose independent rect. 13 14
811 121.68 temperature 15.0 1440 < th dose dependent rect. 18 11
820 121.69 temperature 15.0 90 > th dose independent sin 18 NA
821 121.69 temperature 15.0 1440 < th dose independent sin 16 NA
823 121.69 wind 3.0 90 > th dose independent rect. 6 1
825 121.69 wind 9.0 1440 < th dose independent rect. 2 8
830 121.69 humidity 70.0 4320 < th dose dependent rect. 19 1
831 121.69 radiation 10.0 90 < th dose dependent rect. 6 1
843 121.70 temperature 15.0 1440 < th dose dependent sin 13 NA
844 121.70 humidity 90.0 720 > th dose dependent rect. 10 6
848 121.71 atmosphere 1015.0 30 < th dose independent rect. 24 11
855 121.71 temperature 15.0 1440 < th dose dependent rect. 20 7
864 121.72 temperature 15.0 1440 < th dose independent rect. 17 10
874 121.72 temperature 20.0 270 < th dose dependent rect. 4 19
914 121.73 temperature 15.0 1440 < th dose dependent rect. 4 21
917 121.74 temperature 15.0 720 > th dose independent sin 22 NA
925 121.75 temperature 15.0 1440 > th dose independent rect. 19 14
926 121.75 humidity 80.0 90 < th dose dependent rect. 6 1
927 121.75 temperature 20.0 720 < th dose dependent rect. 11 6
936 121.75 radiation 10.0 10 < th dose dependent rect. 24 23
945 121.77 radiation 1.0 1440 > th dose independent rect. 8 5
947 121.77 temperature 15.0 1440 < th dose independent rect. 20 6
952 121.77 temperature 15.0 1440 < th dose dependent rect. 22 4
969 121.78 temperature 15.0 90 > th dose independent rect. 24 19
971 121.78 temperature 15.0 1440 < th dose dependent sin 20 NA
985 121.79 humidity 50.0 14400 > th dose independent rect. 8 1
990 121.79 temperature 15.0 1440 < th dose independent rect. 9 16