BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0727000 Os06g0727000|AK108097
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17180.1 | chr2:7476835-7477647 REVERSE LENGTH=271 67 4e-12
AT4G35280.1 | chr4:16787429-16788283 REVERSE LENGTH=285 63 9e-11
AT2G26940.1 | chr2:11496518-11497378 REVERSE LENGTH=287 49 1e-06
AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157 46 9e-06
>AT2G17180.1 | chr2:7476835-7477647 REVERSE LENGTH=271
Length = 270
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 57 PCPLCDRHFPTEKAVHGHMRSHPGRGWRGMEPPR-----------------EPSP----- 94
PC C + F + KA+ GHMR HP R WRG+ PP +PS
Sbjct: 66 PCTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNI 125
Query: 95 ---------GDLALAADGKRYRYVCDRCKAPFETRQALGGHRASHSTKKGC 136
GD+ + R+ CD CK F + QALGGHRA+H KGC
Sbjct: 126 ASCLLMMANGDVPTRSSEVEERFECDGCKKVFGSHQALGGHRATHKDVKGC 176
>AT4G35280.1 | chr4:16787429-16788283 REVERSE LENGTH=285
Length = 284
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 50/113 (44%), Gaps = 33/113 (29%)
Query: 57 PCPLCDRHFPTEKAVHGHMRSHPGRGWRGMEPP---REPSPGD----------------- 96
PC C R F + KA+ GHMR HP R WRG+ PP R P+
Sbjct: 78 PCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNYRVPTAASSKQLNQILPNWVSFMSE 137
Query: 97 --------LALAADGK-----RYRYVCDRCKAPFETRQALGGHRASHSTKKGC 136
L + ++G R+ C CK F + QALGGHRASH KGC
Sbjct: 138 EDHEVASCLLMLSNGTPSSSSIERFECGGCKKVFGSHQALGGHRASHKNVKGC 190
>AT2G26940.1 | chr2:11496518-11497378 REVERSE LENGTH=287
Length = 286
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 36 VASWREKLADMAAADERAGRYPCPLCDRHFPTEKAVHGHMRSHPGRGWRGMEPP 89
V +EK D+A D G+ C LC + F T ++ GHMR HP R W+G+ PP
Sbjct: 100 VKKEKEKEIDLARTDV-EGKIRCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPP 152
>AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157
Length = 156
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 27 KSSHEMDDAVASWREKLADMAAADERAGRYPCPLCDRHFPTEKAVHGHMRSHPGRGWRGM 86
+S EM + +A+ L+ D ++ + C C++ FP+ +A+ GH SH R +
Sbjct: 5 RSDMEMINNMANCLILLSKAHQNDTKSRVFACKTCNKEFPSFQALGGHRASH--RRSAAL 62
Query: 87 EPPREPSPGDLALAADGKRYRYVCDRCKAPFETRQALGGHRASH 130
E PSP + K ++ C C A F QALGGH H
Sbjct: 63 EGHAPPSPKRV------KPVKHECPICGAEFAVGQALGGHMRKH 100
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,547,399
Number of extensions: 185256
Number of successful extensions: 671
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 8
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)