Os06g0715400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
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Os06g0715400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : t-snare domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.06 | 0.17 | 11 | 0.194 | 0.109 | -1.14 | -0.257 | -0.898 | 0.0519 | 3.71 | 10.4 | 10 | -- | -- |
| 13.48 | 0.172 | 11 | 0.313 | 0.121 | -1.13 | 0.022 | -- | 0.0818 | 3.25 | 10.4 | 10 | -- | -- |
| 13.12 | 0.17 | 11 | 0.223 | 0.117 | -1.13 | -- | -0.667 | 0.0573 | 3.27 | 8.997 | 7 | -- | -- |
| 13.48 | 0.172 | 11 | 0.313 | 0.121 | -1.14 | -- | -- | 0.0819 | 3.33 | 10.4 | 10 | -- | -- |
| 13.65 | 0.173 | 11 | 0.247 | -- | -1.26 | -- | -0.696 | 0.0766 | -- | 9.931 | 9 | -- | -- |
| 25.51 | 0.237 | 11 | 0.102 | 0.437 | -- | 0.22 | -- | -0.0745 | 2.53 | -- | -- | -- | -- |
| 25.68 | 0.237 | 11 | 0.096 | 0.439 | -- | -- | -- | -0.0759 | 2.57 | -- | -- | -- | -- |
| 14.05 | 0.175 | 11 | 0.342 | -- | -1.27 | -- | -- | 0.103 | -- | 10.4 | 10 | -- | -- |
| 15.83 | 0.186 | 11 | -- | 0.168 | -0.985 | -- | -- | 0.0293 | 3.07 | 10.4 | 10 | -- | -- |
| 36.95 | 0.284 | 11 | 0.115 | -- | -- | -- | -- | -0.0649 | -- | -- | -- | -- | -- |
| 25.92 | 0.238 | 11 | -- | 0.44 | -- | -- | -- | -0.0866 | 2.57 | -- | -- | -- | -- |
| 16.96 | 0.192 | 11 | -- | -- | -1.16 | -- | -- | 0.0528 | -- | 10.09 | 2 | -- | -- |
| 37.3 | 0.285 | 11 | -- | -- | -- | -- | -- | -0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 7 | 12.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 10 | 13.06 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 24 | 13.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 13.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 13.53 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 33 | 13.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 13.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 43 | 13.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 46 | 13.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 48 | 13.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 49 | 13.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 54 | 13.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 60 | 13.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 62 | 13.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 64 | 13.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 76 | 13.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 82 | 13.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 89 | 14.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 93 | 14.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 98 | 14.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 106 | 14.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 114 | 14.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 159 | 14.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 167 | 14.44 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 215 | 14.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 236 | 14.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 239 | 14.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 324 | 14.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 388 | 15.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 427 | 15.23 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 478 | 15.36 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 539 | 15.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 713 | 15.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 770 | 16.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 778 | 16.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 804 | 16.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 814 | 16.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 944 | 16.42 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 946 | 16.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 953 | 16.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 964 | 16.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 979 | 16.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |