BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0715400 Os06g0715400|AK071262
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17990.1 | chr2:7827480-7828596 FORWARD LENGTH=339 286 8e-78
AT5G66250.4 | chr5:26469050-26470376 FORWARD LENGTH=327 229 1e-60
AT4G36105.2 | chr4:17083965-17084951 FORWARD LENGTH=252 132 4e-31
>AT2G17990.1 | chr2:7827480-7828596 FORWARD LENGTH=339
Length = 338
Score = 286 bits (733), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 228/326 (69%), Gaps = 23/326 (7%)
Query: 22 LRQQQSQVDALRERLVEVKVGMKC-SEEDSRKELDHLCRRVKTIATLLAYLKSKARIMAI 80
L ++ QVD+L LV+VK ++ SEED+RKEL L RV++ AT+L YL+SKAR++AI
Sbjct: 27 LESRRFQVDSLEAELVDVKAYLEFGSEEDARKELGVLSGRVRSTATMLRYLRSKARVLAI 86
Query: 81 PH-LAHTSCGIRHQDGVGYVDRNGVPLADWSKGGESASCEGLDDETSADSSRVAEHGDAN 139
P LA+ SCG+ + + G+ L + K G S+S +G + T+ ++ R +
Sbjct: 87 PDDLANVSCGVEQIE-----ELKGLNLVE--KDGGSSSSDGARN-TNPETRRYS------ 132
Query: 140 EGDVDVED------ILKSIHVVTDVMETLVKRVIVAESEAANEKEKVRMGLEEIRRKTIQ 193
G + VED +L+SI +VTDV+++LV+RV VAESE+A +KE+ +G EEI RKTIQ
Sbjct: 133 -GSLGVEDGAYTNEMLQSIEMVTDVLDSLVRRVTVAESESAVQKERALLGEEEISRKTIQ 191
Query: 194 VESMSAKVEEMEKFAVGTNGMLNEMRQRVEDMVLETTRQRQRAAENEQELSRVKHDFESL 253
+E++S K+EEME+FA GTN +LNEMR+R+E++V ET RQR++A ENE+EL RVK +FESL
Sbjct: 192 IENLSVKLEEMERFAYGTNSVLNEMRERIEELVEETMRQREKAVENEEELCRVKREFESL 251
Query: 254 RTYVGTLVNVRETLLSSEKQFETMEKLFDRLVARTNQLESXXXXXXXXXXXXXXXNVRLR 313
++YV T NVRETLLSSE+QF+T+E+LF+RLV +T QLE NV+L
Sbjct: 252 KSYVSTFTNVRETLLSSERQFKTIEELFERLVTKTTQLEGEKAQKEVEVQKLMEENVKLT 311
Query: 314 AMIDKKEAQLQAMSEQCKFMALSRPN 339
A++DKKEAQL A++EQCK MALS N
Sbjct: 312 ALLDKKEAQLLALNEQCKVMALSASN 337
>AT5G66250.4 | chr5:26469050-26470376 FORWARD LENGTH=327
Length = 326
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/334 (42%), Positives = 194/334 (58%), Gaps = 60/334 (17%)
Query: 23 RQQQSQVDALRERLVEVKVGMKCSEEDSRKELDHLCRRVKTIATLLAYLKSKARIMAIPH 82
+ + S + L++R + + S++ ++K+++ L RRVKT LL YLKSKA +A
Sbjct: 31 KSRSSNISVLKDRFIAAEDSALVSKDVAQKDIEILLRRVKTATALLTYLKSKATTVAAAD 90
Query: 83 LAHTSCGIRHQDGVGYVDRNGVPLADWSKGGESASCEGLDDETSADSSRVAEHGDANEGD 142
LA+ S ET + EH
Sbjct: 91 LANLSL-----------------------------------ETDQLQDTIDEHDGTY--- 112
Query: 143 VDVEDILKSIHVVTDVMETLVKRVIVAESEAANEKEKVRMGLEEIRRKTIQVESMSAKVE 202
V ++L+ + VT VME+L +R +AESEAA EK KV + EEI+RK Q+E+MS K+E
Sbjct: 113 --VTEMLQHVETVTGVMESLARRAFIAESEAAIEKGKVVLSQEEIQRKVGQLENMSVKLE 170
Query: 203 EMEKFAVGTNGMLNEMRQRVEDMVLETTRQRQRAAENEQELSRVKHDFESLRTYVGTLVN 262
+MEKFA+GT+ +L EMRQRV+D+V ET+RQ+QRA ENE ELSRV+ DFESL++YV +L++
Sbjct: 171 DMEKFALGTSSILCEMRQRVDDLVEETSRQKQRATENELELSRVRRDFESLKSYVTSLIS 230
Query: 263 VRETLLSSEKQFETMEKLFDR--------------------LVARTNQLESXXXXXXXXX 302
VRETL+SSEKQF+T+E+LF+R LVA+T QLES
Sbjct: 231 VRETLVSSEKQFQTIERLFERFIIVSKFAFMASCFRGYKQKLVAKTTQLESEKVQKEAEV 290
Query: 303 XXXXXXNVRLRAMIDKKEAQLQAMSEQCKFMALS 336
NVRL A++DKKEAQL AM+EQCK MALS
Sbjct: 291 QKLMEENVRLTALVDKKEAQLLAMNEQCKMMALS 324
>AT4G36105.2 | chr4:17083965-17084951 FORWARD LENGTH=252
Length = 251
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 154/306 (50%), Gaps = 72/306 (23%)
Query: 39 VKVGMKCSEEDSRKELDHLCRRVKTIATLLAYLKSKARIMAIPHLAHTSCGIRHQDGVGY 98
VK+ CSEED+RKEL L RVK+ AT L+YL+SKARI+A+P L+ + ++ +D
Sbjct: 12 VKMSHDCSEEDARKELKVLLDRVKSAATSLSYLRSKARILAVPGLSLGAQQLQLKDDT-- 69
Query: 99 VDRNGVPLADWSKGGESASCEGLDDETSADSSRVAEHGDANEGDVDVEDILKSIH-VVTD 157
LA +K +S V E G V + L+SI V+TD
Sbjct: 70 ------TLAGTNKNKDSL---------------VIEDG------VYTLNTLQSIEMVITD 102
Query: 158 VMETLVKRVIVAESEAANEKEKVRMGLEEIRRKTIQVESMSAKVEEMEKFAVGTNGMLNE 217
+E+L++RV AESE + KEKV + EEI RKT+Q++++S ++E+ E+
Sbjct: 103 ALESLLRRVTAAESETCSHKEKVIICEEEITRKTVQIQNLSLRLEQTERI---------- 152
Query: 218 MRQRVEDMVLETTRQRQRAAENEQELSRVKHDFESLRTYVGTLVNVRETLLSSEKQ-FET 276
V + ESL+ + NV +TLLSS ++ F+T
Sbjct: 153 ----------------------------VMTECESLKNALTASNNVLDTLLSSSRRHFQT 184
Query: 277 ME---KLFDRLVARTNQLESXXXXXXXXXXXXXXXNVRLRAMIDKKEAQLQAMSEQCKFM 333
+E KL LVA++ QLE N++L ++DKKEAQL A++EQCK M
Sbjct: 185 IEARYKLQSMLVAKSTQLEGEKAQKEVQVQKLMEENMKLTTLLDKKEAQLLALNEQCKVM 244
Query: 334 ALSRPN 339
AL+ N
Sbjct: 245 ALNASN 250
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,639,843
Number of extensions: 213733
Number of successful extensions: 1435
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)