Os06g0708600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0708600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.1 | 0.231 | 13.9 | -0.0811 | 0.128 | 0.907 | -0.303 | -0.231 | 0.288 | 23.1 | 21.2 | 1348 | -- | -- |
| 24.24 | 0.229 | 13.9 | -0.0495 | 0.137 | 0.931 | -0.308 | -- | 0.295 | 23.2 | 21.27 | 1347 | -- | -- |
| 24.47 | 0.23 | 13.9 | -0.0762 | 0.129 | 0.896 | -- | -0.282 | 0.291 | 22.9 | 21.3 | 1335 | -- | -- |
| 24.64 | 0.231 | 13.9 | -0.0133 | 0.127 | 0.929 | -- | -- | 0.301 | 23.1 | 21.3 | 1336 | -- | -- |
| 25.22 | 0.234 | 13.9 | -0.0894 | -- | 0.895 | -- | -0.36 | 0.283 | -- | 21.2 | 1208 | -- | -- |
| 47.84 | 0.324 | 13.9 | 0.358 | 0.168 | -- | -0.393 | -- | 0.551 | 24 | -- | -- | -- | -- |
| 48.51 | 0.326 | 13.9 | 0.373 | 0.17 | -- | -- | -- | 0.553 | 23.8 | -- | -- | -- | -- |
| 25.51 | 0.235 | 13.9 | 0.00455 | -- | 0.918 | -- | -- | 0.305 | -- | 21.3 | 1210 | -- | -- |
| 24.64 | 0.231 | 13.9 | -- | 0.127 | 0.925 | -- | -- | 0.303 | 23.1 | 21.29 | 1335 | -- | -- |
| 50.33 | 0.331 | 13.9 | 0.378 | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
| 52.18 | 0.338 | 13.9 | -- | 0.175 | -- | -- | -- | 0.512 | 24 | -- | -- | -- | -- |
| 25.51 | 0.235 | 13.9 | -- | -- | 0.919 | -- | -- | 0.303 | -- | 21.3 | 1210 | -- | -- |
| 54.11 | 0.343 | 13.9 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 5 | 24.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 7 | 24.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 56 | 24.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 83 | 24.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 145 | 24.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 181 | 24.73 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 189 | 24.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 223 | 24.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 235 | 24.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 327 | 25.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 338 | 25.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 380 | 25.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 393 | 25.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 622 | 25.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 655 | 25.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 705 | 25.80 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 725 | 25.83 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 791 | 25.94 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 811 | 25.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 860 | 26.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 861 | 26.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 865 | 26.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 882 | 26.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 906 | 26.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 12 |
| 924 | 26.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 936 | 26.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 956 | 26.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 970 | 26.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 972 | 26.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 973 | 26.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 997 | 26.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |