BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0708600 Os06g0708600|AK100915
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02790.1  | chr3:604926-605243 FORWARD LENGTH=106              142   4e-35
AT5G16470.1  | chr5:5379516-5379830 FORWARD LENGTH=105            136   2e-33

>AT3G02790.1 | chr3:604926-605243 FORWARD LENGTH=106
          Length = 105

 Score =  142 bits (358), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 84/114 (73%), Gaps = 9/114 (7%)

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQDKGGHAKLECPLCKTTAPDIK 60
           MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG  DR G++KGGHAK ECP CK TAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  SMQIHHEARHPKLPFEPDKLNNLHXXXXXXXXXXXXXXXSSSKPKPGVRGSLKK 114
           +MQIHHE++HP + +E  KL NLH               + SKPKPG+RGSLKK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLH---------AVLAPVAESKPKPGIRGSLKK 105



>AT5G16470.1 | chr5:5379516-5379830 FORWARD LENGTH=105
          Length = 104

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 83/114 (72%), Gaps = 10/114 (8%)

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQKDRLGQDKGGHAKLECPLCKTTAPDIK 60
           MTGKAKPKKHTAKE+ AK DAA TNRGGGKAG  DR G++KGGHAK ECP CK T PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  SMQIHHEARHPKLPFEPDKLNNLHXXXXXXXXXXXXXXXSSSKPKPGVRGSLKK 114
           +MQIHHE++HPKL +E  +  NLH                SSKPKPG+RGSLKK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLH--------EALAAPAESSKPKPGIRGSLKK 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,336,061
Number of extensions: 83161
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 104 (44.7 bits)