FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0708200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.16 (0.0381) R2 : 0.684
β1 : -4.04 (0.139) R2dD : 0.606 R2D : 0.525
β2 : 1.12 (0.0902) R2dC : 0.106 R2C : 0.0859
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.594 (0.0811) R2dN8 : 0.0497 R2N8 : -0.0211
σ : 0.715
deviance : 233.05
__
_____
C
peak time of C : 23.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.81 0.685 5.97 -2.73 1.03 -0.537 -0.00408 10.2 -0.492 23.3 32.8 1040 -- --
216.38 0.685 6.12 -4.12 1.09 0.595 0.228 -- -0.446 23.4 33.05 1042 -- --
212.81 0.679 5.97 -2.73 1.02 -0.534 -- 10.2 -0.492 23.3 32.8 1032 -- --
215.77 0.684 6.13 -4.18 1.04 0.622 -- -- -0.493 23.3 32.79 1050 -- --
276.37 0.774 5.93 -2.7 -- -0.389 -- 10.8 -0.451 -- 32.7 990 -- --
232.89 0.715 6.16 -4.03 1.12 -- 0.196 -- -0.593 23.5 -- -- -- --
233.05 0.715 6.16 -4.04 1.12 -- -- -- -0.594 23.5 -- -- -- --
264.92 0.758 6.17 -4.34 -- 1.29 -- -- -0.741 -- 24.6 944 -- --
655.94 1.2 6.06 -- 1.04 -1.46 -- -- -0.165 23 32.79 1050 -- --
311.2 0.824 6.13 -4.01 -- -- -- -- -0.582 -- -- -- -- --
663.52 1.2 6.06 -- 1.07 -- -- -- -0.144 23.2 -- -- -- --
482.47 1.02 5.86 -- -- -2.56 -- -- 0.629 -- -7.668 47520 -- --
735.69 1.27 6.03 -- -- -- -- -- -0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.11 atmosphere 1015 720 < th dose dependent rect. 17 2
3 203.87 atmosphere 1015 90 < th dose dependent rect. 17 12
6 205.29 atmosphere 1005 720 < th dose independent rect. 17 1
9 205.43 temperature 15 720 > th dose dependent rect. 17 2
16 206.68 temperature 25 720 > th dose dependent rect. 17 6
22 207.20 humidity 80 720 > th dose independent rect. 20 2
32 207.71 temperature 15 720 > th dose dependent rect. 16 6
36 207.92 humidity 80 720 < th dose dependent rect. 20 1
39 208.01 temperature 30 720 > th dose independent rect. 17 2
61 208.32 humidity 70 720 > th dose independent rect. 18 13
75 208.60 humidity 70 720 > th dose independent rect. 19 8
76 208.61 humidity 80 720 < th dose dependent rect. 18 4
112 209.37 humidity 70 720 < th dose independent rect. 18 1
117 209.42 humidity 80 720 < th dose independent rect. 20 1
118 209.47 temperature 15 720 > th dose dependent rect. 14 6
137 209.80 temperature 15 720 > th dose dependent rect. 14 8
160 210.40 temperature 30 720 < th dose independent rect. 17 14
193 210.72 temperature 25 720 > th dose dependent rect. 20 1
199 210.79 humidity 80 720 < th dose dependent rect. 18 13
238 211.31 temperature 30 720 < th dose dependent rect. 13 10
259 211.38 humidity 60 720 > th dose dependent rect. 19 4
267 211.49 temperature 30 720 < th dose dependent rect. 19 2
282 211.51 atmosphere 1015 10 < th dose dependent rect. 18 12
295 211.64 temperature 30 720 < th dose independent rect. 17 8
308 211.72 wind 7 43200 > th dose independent rect. 8 1
332 211.91 wind 7 43200 < th dose independent rect. 8 1
338 211.95 temperature 30 720 < th dose dependent rect. 15 6
343 211.99 atmosphere 1005 720 > th dose dependent rect. 19 1
357 212.18 temperature 30 720 < th dose independent rect. 15 16
361 212.21 radiation 10 1440 < th dose independent rect. 16 14
373 212.35 radiation 10 1440 < th dose independent rect. 16 3
378 212.37 radiation 10 1440 < th dose independent rect. 16 12
380 212.38 radiation 10 1440 < th dose independent rect. 16 8
407 212.46 wind 5 43200 > th dose dependent rect. 8 2
417 212.52 humidity 50 720 > th dose dependent rect. 18 6
431 212.58 temperature 25 720 > th dose dependent sin 13 NA
439 212.65 atmosphere 995 720 > th dose dependent rect. 13 9
447 212.78 radiation 10 1440 > th dose independent rect. 16 2
466 212.82 wind 7 43200 > th dose independent rect. 20 7
467 212.82 wind 7 43200 < th dose independent rect. 20 7
474 212.83 temperature 15 720 > th dose dependent rect. 10 12
475 212.84 atmosphere 995 30 > th dose dependent rect. 15 12
482 212.92 wind 7 43200 > th dose independent rect. 18 16
483 212.92 wind 7 43200 < th dose independent rect. 18 16
488 212.94 temperature 30 720 < th dose dependent rect. 17 6
495 212.97 atmosphere 995 720 > th dose dependent rect. 15 8
497 212.98 wind 7 43200 > th dose dependent rect. 19 15
526 213.09 humidity 60 720 > th dose dependent rect. 19 2
533 213.12 temperature 10 720 > th dose dependent sin 19 NA
534 213.12 atmosphere 995 720 > th dose dependent rect. 15 1
548 213.17 wind 9 43200 > th dose dependent rect. 21 3
549 213.17 wind 7 43200 > th dose dependent rect. 20 6
563 213.24 radiation 40 1440 < th dose dependent rect. 16 1
577 213.30 atmosphere 1005 720 > th dose dependent rect. 15 6
581 213.32 radiation 1 1440 > th dose dependent rect. 16 13
583 213.33 radiation 1 1440 > th dose dependent rect. 16 3
598 213.35 temperature 10 720 > th dose dependent rect. 8 14
599 213.36 radiation 1 1440 > th dose dependent rect. 16 1
604 213.37 atmosphere 995 30 > th dose dependent rect. 13 14
636 213.51 wind 7 43200 > th dose dependent sin 10 NA
650 213.55 radiation 40 1440 < th dose dependent rect. 16 3
657 213.57 atmosphere 1000 30 > th dose dependent rect. 19 8
658 213.57 radiation 40 1440 < th dose dependent rect. 16 12
665 213.60 radiation 40 1440 < th dose dependent rect. 16 6
670 213.62 radiation 40 1440 < th dose dependent rect. 16 10
768 213.89 wind 9 43200 < th dose independent rect. 16 19
776 213.92 temperature 30 720 < th dose independent rect. 15 9
793 213.96 temperature 30 14400 > th dose dependent rect. 17 2
811 213.97 temperature 10 90 > th dose dependent rect. 17 12
813 213.98 wind 7 43200 < th dose independent sin 10 NA
828 214.02 wind 7 43200 > th dose independent sin 10 NA
862 214.05 atmosphere 1015 270 < th dose dependent sin 15 NA
924 214.16 wind 7 43200 > th dose independent rect. 23 1
978 214.31 wind 7 43200 < th dose independent rect. 23 1