BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0708200 Os06g0708200|AK103849
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60460.1  | chr1:22275600-22278886 FORWARD LENGTH=494          130   5e-31

>AT1G60460.1 | chr1:22275600-22278886 FORWARD LENGTH=494
          Length = 493

 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 5/183 (2%)

Query: 5   QVLHFVEFIPCPISQSSLSALMSIDWQSYGFKFKGGFIDDDGNAELQWDNM-AFSHVDIA 63
           +VL+F  F+P P+   +LSAL  IDW+ YG        D DG+  L+WDN  ++  + IA
Sbjct: 269 EVLYFDNFLPSPVPHLALSALKKIDWKKYGLIL-ANVNDQDGHVFLEWDNFPSYVQIQIA 327

Query: 64  IHTYHEGAVDEWKSSQPERHLLRKALKSALFGLKADHAEDFLSCHGQKVREYVPDLAESI 123
           +H YH       K+  P   LL+K +K+AL  LKA H    LS H +K+  YVPDLA SI
Sbjct: 328 LHWYHNQYPTRQKNG-PGISLLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSI 386

Query: 124 AGLILSSNDQEFQDECIALLGLGSDQDLTEGAVRSCIGEKMNRIVEMNDTKENVEHN-AP 182
           AGLI SS D +FQ +C+++LG  + Q++    V + I  K+  ++ MN+ K   +   AP
Sbjct: 387 AGLIFSSTDLDFQGDCLSVLGFQT-QEVERDTVENYIQRKIVTVIGMNERKPQKDQEAAP 445

Query: 183 YLF 185
           +LF
Sbjct: 446 FLF 448



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,269,016
Number of extensions: 173528
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)