Os06g0697200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase domain containing protein.
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Os06g0697200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.05 | 0.694 | 6.51 | 5.25 | 0.0874 | 1.18 | 1.55 | -0.191 | 0.778 | 16.6 | 1011 | 4554 | -- | -- |
| 218.14 | 0.688 | 6.51 | 5.23 | 0.0887 | 1.19 | 1.53 | -- | 0.778 | 16.6 | 1011 | 4628 | -- | -- |
| 224.31 | 0.698 | 6.51 | 5.22 | 0.103 | 1.19 | -- | -0.0118 | 0.776 | 15.5 | 1011 | 4669 | -- | -- |
| 224.3 | 0.698 | 6.51 | 5.21 | 0.102 | 1.19 | -- | -- | 0.779 | 15.3 | 1011 | 4669 | -- | -- |
| 224.89 | 0.698 | 6.51 | 5.22 | -- | 1.19 | -- | -0.0271 | 0.778 | -- | 1011 | 4627 | -- | -- |
| 260.45 | 0.757 | 6.57 | 4.86 | 0.137 | -- | 1.51 | -- | 0.495 | 16.4 | -- | -- | -- | -- |
| 266.59 | 0.765 | 6.57 | 4.87 | 0.148 | -- | -- | -- | 0.503 | 15.6 | -- | -- | -- | -- |
| 224.89 | 0.698 | 6.51 | 5.21 | -- | 1.2 | -- | -- | 0.777 | -- | 1011 | 4627 | -- | -- |
| 889.24 | 1.4 | 6.69 | -- | 0.0489 | 0.387 | -- | -- | -0.016 | 17.4 | 1011 | 4669 | -- | -- |
| 267.8 | 0.765 | 6.57 | 4.87 | -- | -- | -- | -- | 0.499 | -- | -- | -- | -- | -- |
| 892.31 | 1.4 | 6.69 | -- | 0.0526 | -- | -- | -- | -0.0396 | 16.3 | -- | -- | -- | -- |
| 539.16 | 1.08 | 6.85 | -- | -- | -2.94 | -- | -- | -0.852 | -- | 1016 | 47520 | -- | -- |
| 892.46 | 1.39 | 6.69 | -- | -- | -- | -- | -- | -0.0408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.35 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 212.59 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 16 | 213.37 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 18 | 213.41 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 22 | 213.45 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 34 | 214.43 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 35 | 214.51 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 2 | 2 |
| 80 | 215.58 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 113 | 215.98 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 122 | 216.06 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 125 | 216.07 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 156 | 216.42 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 163 | 216.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 222 | 216.90 | humidity | 60.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 225 | 216.91 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 240 | 217.05 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 260 | 217.16 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 285 | 217.29 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 290 | 217.31 | humidity | 60.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 312 | 217.36 | radiation | 40.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 326 | 217.44 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 328 | 217.45 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 332 | 217.50 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 462 | 217.85 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 473 | 217.89 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 484 | 217.93 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 503 | 218.01 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 508 | 218.03 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 533 | 218.09 | radiation | 10.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 625 | 218.25 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 642 | 218.26 | radiation | 10.0 | 14400 | < th | dose independent | no | NA | NA |
| 691 | 218.27 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 739 | 218.41 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 761 | 218.48 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 812 | 218.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 816 | 218.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 929 | 218.77 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 932 | 218.77 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 956 | 218.83 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 14 | 15 |