Os06g0694400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0694400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 490.25 | 1.04 | 4.09 | -3.41 | 2.15 | -3.58 | -1.49 | 7.21 | 1.67 | 17.5 | 12.8 | 787 | -- | -- |
| 523.71 | 1.07 | 4.16 | -3.72 | 1.02 | -2.79 | 1.47 | -- | 1.57 | 18.8 | 11.9 | 1022 | -- | -- |
| 486.73 | 1.03 | 4.08 | -3.37 | 1.85 | -3.38 | -- | 6.41 | 1.65 | 17.7 | 12.84 | 844 | -- | -- |
| 532.5 | 1.07 | 4.15 | -3.75 | 0.99 | -2.86 | -- | -- | 1.56 | 18.7 | 12.61 | 1021 | -- | -- |
| 499.26 | 1.04 | 3.95 | -2.96 | -- | -2.91 | -- | 5.99 | 2.04 | -- | 11.67 | 1220 | -- | -- |
| 699.66 | 1.24 | 4.23 | -4.31 | 0.785 | -- | -0.458 | -- | 0.97 | 10.3 | -- | -- | -- | -- |
| 700.4 | 1.24 | 4.23 | -4.33 | 0.785 | -- | -- | -- | 0.97 | 10.5 | -- | -- | -- | -- |
| 539.75 | 1.08 | 4.1 | -3.7 | -- | -2.55 | -- | -- | 1.61 | -- | 11.87 | 1220 | -- | -- |
| 868.82 | 1.37 | 3.99 | -- | 0.825 | -3.71 | -- | -- | 2.21 | 18.4 | 10.01 | 1132 | -- | -- |
| 738.29 | 1.27 | 4.25 | -4.34 | -- | -- | -- | -- | 0.966 | -- | -- | -- | -- | -- |
| 1194.53 | 1.62 | 4.12 | -- | 0.818 | -- | -- | -- | 1.45 | 10.9 | -- | -- | -- | -- |
| 875.3 | 1.38 | 3.95 | -- | -- | -3.41 | -- | -- | 2.28 | -- | 10.01 | 1327 | -- | -- |
| 1236.07 | 1.64 | 4.14 | -- | -- | -- | -- | -- | 1.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 495.37 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 496.40 | radiation | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 9 | 499.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 25 | 501.53 | radiation | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 50 | 504.11 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 66 | 504.40 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 23 |
| 67 | 504.43 | radiation | 20 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 70 | 504.74 | radiation | 10 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 113 | 505.62 | radiation | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 125 | 506.47 | radiation | 30 | 720 | < th | dose dependent | no | NA | NA |
| 130 | 506.70 | radiation | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 131 | 506.79 | radiation | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 143 | 507.84 | radiation | 10 | 1440 | > th | dose independent | sin | 5 | NA |
| 155 | 508.53 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 23 |
| 156 | 508.61 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 157 | 508.64 | radiation | 10 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 182 | 509.25 | radiation | 1 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 184 | 509.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 194 | 509.90 | radiation | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 196 | 509.99 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 198 | 510.03 | radiation | 10 | 720 | > th | dose independent | rect. | 7 | 10 |
| 201 | 510.17 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 205 | 510.75 | radiation | 10 | 720 | > th | dose independent | rect. | 7 | 23 |
| 206 | 510.75 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 225 | 510.91 | radiation | 20 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 232 | 511.54 | radiation | 10 | 720 | > th | dose independent | rect. | 5 | 12 |
| 245 | 511.63 | radiation | 20 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 248 | 511.82 | radiation | 20 | 720 | < th | dose independent | rect. | 2 | 18 |
| 249 | 511.88 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 22 |
| 265 | 512.36 | radiation | 10 | 720 | > th | dose independent | no | NA | NA |
| 440 | 512.83 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 468 | 513.54 | radiation | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 527 | 514.06 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 23 |
| 529 | 514.14 | radiation | 20 | 720 | > th | dose independent | rect. | 13 | 21 |
| 533 | 514.30 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 535 | 514.31 | radiation | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 539 | 514.49 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 570 | 515.10 | radiation | 10 | 720 | > th | dose independent | sin | 23 | NA |
| 588 | 515.26 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 589 | 515.28 | radiation | 1 | 720 | > th | dose dependent | no | NA | NA |
| 640 | 515.48 | radiation | 1 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 641 | 515.58 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 670 | 516.07 | radiation | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 714 | 516.70 | radiation | 20 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 731 | 517.01 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 763 | 517.48 | radiation | 20 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 786 | 517.72 | radiation | 20 | 720 | < th | dose independent | no | NA | NA |
| 790 | 517.77 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 905 | 518.77 | radiation | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 909 | 518.86 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 23 |
| 919 | 519.10 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 958 | 519.80 | radiation | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 964 | 519.92 | radiation | 40 | 1440 | > th | dose dependent | sin | 11 | NA |
| 989 | 520.38 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 999 | 520.60 | radiation | 1 | 720 | > th | dose dependent | sin | 0 | NA |