BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0694400 Os06g0694400|AK120261
         (243 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69360.1  | chr1:26072520-26075420 REVERSE LENGTH=897           57   1e-08
AT1G26620.1  | chr1:9195838-9198719 REVERSE LENGTH=868             53   1e-07
AT1G13940.1  | chr1:4762703-4765923 REVERSE LENGTH=1006            51   6e-07

>AT1G69360.1 | chr1:26072520-26075420 REVERSE LENGTH=897
          Length = 896

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 34/40 (85%)

Query: 72  RESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAELGGEK 111
           R+ +++T++EH+ VF+ QV+ELHRLYR QKSLMAE+ G+ 
Sbjct: 57  RDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVKGKN 96



>AT1G26620.1 | chr1:9195838-9198719 REVERSE LENGTH=868
          Length = 867

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 33/40 (82%)

Query: 72  RESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAELGGEK 111
           ++ ++ T++EH+ VF+ QVHELHRLYRVQK+L+ E+ G+ 
Sbjct: 15  KDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKN 54



>AT1G13940.1 | chr1:4762703-4765923 REVERSE LENGTH=1006
          Length = 1005

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query: 72  RESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAEL 107
           ++ VRRT++EH+ VF+ QV ELHR+YR QK +M EL
Sbjct: 63  KDVVRRTMLEHEAVFKTQVLELHRVYRTQKDMMDEL 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,317,568
Number of extensions: 215615
Number of successful extensions: 593
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 5
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)