Os06g0693700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1644 family protein.
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Os06g0693700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1644 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.15 | 0.216 | 9.95 | 0.087 | 0.349 | -0.544 | -0.075 | 0.39 | -0.147 | 6.01 | 26.6 | 242 | -- | -- |
| 21 | 0.213 | 9.95 | 0.0284 | 0.367 | -0.525 | -0.216 | -- | -0.179 | 6.41 | 26.41 | 180 | -- | -- |
| 20.87 | 0.213 | 9.94 | 0.0932 | 0.387 | -0.514 | -- | 0.393 | -0.143 | 6.03 | 26.5 | 206 | -- | -- |
| 21.1 | 0.214 | 9.95 | -0.000296 | 0.393 | -0.496 | -- | -- | -0.176 | 6.31 | 26.48 | 180 | -- | -- |
| 24.95 | 0.233 | 9.94 | 0.153 | -- | -0.725 | -- | 0.453 | -0.0839 | -- | 26.4 | 262 | -- | -- |
| 32.42 | 0.267 | 9.98 | -0.146 | 0.757 | -- | 0.154 | -- | -0.308 | 5.13 | -- | -- | -- | -- |
| 32.48 | 0.267 | 9.98 | -0.146 | 0.759 | -- | -- | -- | -0.309 | 5.17 | -- | -- | -- | -- |
| 25.47 | 0.235 | 9.95 | 0.0667 | -- | -0.718 | -- | -- | -0.114 | -- | 26.6 | 267 | -- | -- |
| 21.1 | 0.214 | 9.95 | -- | 0.393 | -0.496 | -- | -- | -0.176 | 6.31 | 26.48 | 180 | -- | -- |
| 62.6 | 0.37 | 9.99 | -0.119 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 33.04 | 0.269 | 9.98 | -- | 0.756 | -- | -- | -- | -0.293 | 5.17 | -- | -- | -- | -- |
| 25.55 | 0.235 | 9.95 | -- | -- | -0.713 | -- | -- | -0.126 | -- | 26.54 | 267 | -- | -- |
| 62.97 | 0.37 | 9.99 | -- | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 3 | 20.02 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 4 | 20.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 5 | 20.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 23 | 20.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 24 | 20.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 71 | 20.92 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 74 | 20.94 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 13 |
| 78 | 20.96 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 156 | 21.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 159 | 21.41 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 165 | 21.46 | temperature | 20 | 10 | > th | dose dependent | sin | 22 | NA |
| 166 | 21.47 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 191 | 21.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 201 | 21.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 205 | 21.64 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 212 | 21.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 213 | 21.65 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 236 | 21.69 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 353 | 21.85 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 368 | 21.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 519 | 22.28 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 547 | 22.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 609 | 22.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 635 | 22.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 674 | 22.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 703 | 22.62 | humidity | 90 | 43200 | > th | dose independent | sin | 8 | NA |
| 716 | 22.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 717 | 22.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 718 | 22.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 731 | 22.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 737 | 22.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 739 | 22.65 | humidity | 80 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 744 | 22.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 759 | 22.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 766 | 22.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 791 | 22.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 21 |
| 804 | 22.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 820 | 22.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 821 | 22.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 828 | 22.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 830 | 22.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 885 | 22.72 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 895 | 22.73 | radiation | 40 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 902 | 22.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 913 | 22.74 | radiation | 40 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 942 | 22.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 15 |
| 947 | 22.75 | humidity | 90 | 43200 | < th | dose independent | sin | 7 | NA |
| 951 | 22.75 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 967 | 22.75 | humidity | 80 | 43200 | > th | dose dependent | sin | 4 | NA |
| 973 | 22.75 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 977 | 22.76 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 978 | 22.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 980 | 22.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 10 |