Os06g0687900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 43 protein.
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Os06g0687900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 43 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.4 | 0.241 | 11.3 | -0.21 | 0.669 | -0.617 | 0.228 | -0.538 | -0.152 | 1.31 | 0.4701 | 8483 | -- | -- |
| 26.85 | 0.241 | 11.3 | -0.182 | 0.67 | -0.501 | 0.158 | -- | -0.14 | 0.953 | 1.18 | 9692 | -- | -- |
| 26.6 | 0.24 | 11.3 | -0.208 | 0.668 | -0.602 | -- | -0.46 | -0.152 | 1.33 | 0.47 | 8484 | -- | -- |
| 26.65 | 0.24 | 11.3 | -0.155 | 0.666 | -0.512 | -- | -- | -0.133 | 1.4 | 0.67 | 8489 | -- | -- |
| 39.95 | 0.296 | 11.3 | -0.25 | -- | -0.353 | -- | -0.0205 | -0.224 | -- | 0.47 | 8484 | -- | -- |
| 30.39 | 0.258 | 11.3 | -0.28 | 0.619 | -- | 0.163 | -- | -0.237 | 1.59 | -- | -- | -- | -- |
| 30.49 | 0.259 | 11.3 | -0.285 | 0.619 | -- | -- | -- | -0.237 | 1.59 | -- | -- | -- | -- |
| 39.95 | 0.296 | 11.3 | -0.25 | -- | -0.353 | -- | -- | -0.224 | -- | 0.47 | 8484 | -- | -- |
| 27.14 | 0.243 | 11.3 | -- | 0.654 | -0.525 | -- | -- | -0.121 | 1.28 | 0.67 | 8489 | -- | -- |
| 53.9 | 0.343 | 11.3 | -0.26 | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
| 32.63 | 0.267 | 11.3 | -- | 0.614 | -- | -- | -- | -0.206 | 1.57 | -- | -- | -- | -- |
| 41.56 | 0.301 | 11.3 | -- | -- | -0.355 | -- | -- | -0.195 | -- | 0.68 | 24888 | -- | -- |
| 55.68 | 0.348 | 11.3 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.14 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 15 |
| 16 | 25.68 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 14 |
| 18 | 25.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 22 | 25.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 31 | 25.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 42 | 25.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 61 | 26.06 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 62 | 26.07 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 4 |
| 77 | 26.14 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 1 |
| 91 | 26.19 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 94 | 26.20 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 100 | 26.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 156 | 26.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 163 | 26.38 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 172 | 26.40 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 177 | 26.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 198 | 26.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 224 | 26.46 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 227 | 26.46 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 232 | 26.47 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |
| 236 | 26.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 2 |
| 240 | 26.49 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 269 | 26.52 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 275 | 26.53 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 11 | NA |
| 288 | 26.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 298 | 26.56 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 299 | 26.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 327 | 26.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 334 | 26.59 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 357 | 26.62 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 363 | 26.63 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 411 | 26.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 413 | 26.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 426 | 26.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 434 | 26.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 435 | 26.71 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 436 | 26.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 452 | 26.72 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 522 | 26.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 529 | 26.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 547 | 26.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 589 | 26.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 619 | 26.83 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 632 | 26.84 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 669 | 26.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 10 |
| 691 | 26.86 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 696 | 26.87 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 712 | 26.87 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 714 | 26.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 14 |
| 722 | 26.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 733 | 26.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 759 | 26.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 798 | 26.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 815 | 26.90 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 13 |
| 821 | 26.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 848 | 26.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 852 | 26.91 | radiation | 1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 879 | 26.92 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 886 | 26.92 | wind | 9 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 889 | 26.92 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 924 | 26.93 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 952 | 26.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 972 | 26.94 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |