BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0687900 Os06g0687900|AB054003
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493 315 1e-86
AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526 297 5e-81
AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395 80 8e-16
AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352 51 6e-07
>AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493
Length = 492
Score = 315 bits (808), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 144/242 (59%), Positives = 191/242 (78%), Gaps = 10/242 (4%)
Query: 1 MPHDWADRHATENRMRLHALRVIRERKMDGVIVFADDSNVHSLELFDEVQKVQWMGAVSV 60
MP+ W DRH E +MRLHALRV+RE+K+DG+++FADDSN+HS+ELFDE+Q V+W GA+SV
Sbjct: 218 MPNTWEDRHKLETKMRLHALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSV 277
Query: 61 GILAHTGTADQPRLSE-------EDKQNMPLPVQGPACNSSGHLAGWHTFNSLPFAGKTA 113
GILAH+G AD+ LS ++K+ +P+QGP+CNSS L GWH FN+ P+A KTA
Sbjct: 278 GILAHSGNADE--LSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTA 335
Query: 114 TVVGEAAPVLPRGLEWAGFVLNSRILWKEA-EGKPDWVKDLDAVGENGEEIENPLILLND 172
+ E APV+P +EW+GFVLNSR+LWKE+ + KP WVKDL + + EIE+PL L+ D
Sbjct: 336 VYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAWVKDLSLLDDGYAEIESPLSLVKD 395
Query: 173 PSSVEPLGNCGKKILLWWLRVEARADSKFPQGWVIEPPLDIVVPAKRTPWPETTAELSAE 232
PS VEPLG+CG+++LLWWLRVEARADSKFP GW+I+ PL+I VP+KRTPWP++++EL A
Sbjct: 396 PSMVEPLGSCGRRVLLWWLRVEARADSKFPPGWIIKSPLEITVPSKRTPWPDSSSELPAA 455
Query: 233 LV 234
+
Sbjct: 456 AI 457
>AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526
Length = 525
Score = 297 bits (760), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 142/229 (62%), Positives = 179/229 (78%), Gaps = 10/229 (4%)
Query: 1 MPHDWADRHATENRMRLHALRVIRERKMDGVIVFADDSNVHSLELFDEVQKVQWMGAVSV 60
MP+ W DR E MRL ALRV+RE K+DG+++FADDSN+HS+ELFDE+Q V+W G VSV
Sbjct: 226 MPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSV 285
Query: 61 GILAHTGTADQPRLSEEDKQNMP---------LPVQGPACNSSGHLAGWHTFNSLPFAGK 111
GILAH+G A++ LS E ++ M LPVQGPACNS+ L GWH FN+LP+AGK
Sbjct: 286 GILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGK 345
Query: 112 TATVVGEAAPVLPRGLEWAGFVLNSRILWKEAEGKPDWVKDLDAVGENGEEIENPLILLN 171
+A + + A VLP+ LEW+GFVLNSR+LW+EAE KP+WVKD ++ EN E +E+PL LL
Sbjct: 346 SAVYIDDVAAVLPQKLEWSGFVLNSRLLWEEAENKPEWVKDFGSLNEN-EGVESPLSLLK 404
Query: 172 DPSSVEPLGNCGKKILLWWLRVEARADSKFPQGWVIEPPLDIVVPAKRT 220
DPS VEPLG+CG+++LLWWLRVEARADSKFP GW+I+PPL+I V AKRT
Sbjct: 405 DPSMVEPLGSCGRQVLLWWLRVEARADSKFPPGWIIDPPLEITVAAKRT 453
>AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395
Length = 394
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 19 ALRVIRERKMDGVIVFADDSNVHSLELFDEVQKVQWMGAVSVGILAHTGTADQPRLSEED 78
AL I K+DG++ FADD N++SLELF ++++ G V +LA +
Sbjct: 221 ALEHIELHKLDGIVYFADDDNIYSLELFQSLRQISRFGTWPVAMLAQS------------ 268
Query: 79 KQNMPLPVQGPACNSSGHLAGWHTFNSLPFAGKTATVVGEAAPVLPR-GLEWAGFVLNSR 137
+N + ++GP CN S + GWHT E + L R ++ +GF NS
Sbjct: 269 -KNKAI-LEGPVCNGS-QVIGWHT--------------NEKSKRLRRFHVDMSGFAFNST 311
Query: 138 ILWKEAEGKPDW---VKDLDAVGENGEEIENPLILLNDPSSVEPLGNCGKKILLWWLRVE 194
ILW + + + LD V E +E ++ D S +E + IL W L ++
Sbjct: 312 ILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWHLHLD 371
Query: 195 ARADSKFPQGWVIEPPLDIVVPAK 218
A D +PQGW I+ L ++ K
Sbjct: 372 A-LDVPYPQGWAIQKNLQALITMK 394
>AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352
Length = 351
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 37/198 (18%)
Query: 4 DWADRHATENRMRLHALRVIRERKMDGVIVFADDSNVHSLELFDEVQKVQWMGAVSVGIL 63
D+ + + R ALR I K+ G++ FA +N++ L+ F +++ ++ G + +L
Sbjct: 183 DFTSLESELDHQRNLALRHIEHHKLSGIVHFAGLNNIYDLDFFVKIRDIEVFGTWPMALL 242
Query: 64 AHTGTADQPRLSEEDKQNMPLPVQGPACNSSGHLAGWHTFNSLPFAGKTATVVGEAAPVL 123
+ A++ R+ V+GP C SS + GWH + E P
Sbjct: 243 S----ANRKRVV----------VEGPVCESS-QVLGWHL--------RKINNETETKP-- 277
Query: 124 PRGLEWAGFVLNSRILWK-EAEGKPDWVKDLDAVGENGEEIEN-PLILLNDPSSVE--PL 179
+ + F NS ILW E G+P V+ G + I+ ++L D + ++ P
Sbjct: 278 --PIHISSFAFNSSILWDPERWGRPSSVE-----GTKQDSIKYVKQVVLEDDTKLKGLPA 330
Query: 180 GNCGKKILLWWLRVEARA 197
+C KI+LW L+ R
Sbjct: 331 QDCS-KIMLWRLKFPTRT 347
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,849,802
Number of extensions: 259806
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 4
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 111 (47.4 bits)