Os06g0686600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0686600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.63 | 0.501 | 11.8 | -2.36 | 1.01 | 1.48 | -0.889 | -5.31 | -0.131 | 15 | 22.86 | 1632 | -- | -- |
| 129.44 | 0.53 | 11.6 | -0.871 | 1.23 | 1.37 | -0.797 | -- | 0.257 | 14.6 | 17.48 | 1081 | -- | -- |
| 116.24 | 0.502 | 11.8 | -2.35 | 1 | 1.47 | -- | -5.19 | -0.133 | 14.9 | 22.75 | 1636 | -- | -- |
| 130.4 | 0.532 | 11.6 | -1.26 | 1.1 | 1.56 | -- | -- | 0.0688 | 15 | 13.62 | 8124 | -- | -- |
| 136.37 | 0.544 | 11.7 | -1.84 | -- | 2.11 | -- | -5.48 | -0.0779 | -- | 21.2 | 148 | -- | -- |
| 167.55 | 0.607 | 11.5 | -0.426 | 1.04 | -- | -1 | -- | 0.529 | 15.2 | -- | -- | -- | -- |
| 170.76 | 0.612 | 11.5 | -0.446 | 1.04 | -- | -- | -- | 0.523 | 15.2 | -- | -- | -- | -- |
| 153.04 | 0.576 | 11.6 | -0.91 | -- | 1.97 | -- | -- | 0.192 | -- | 17.9 | 114 | -- | -- |
| 146.89 | 0.564 | 11.5 | -- | 1.19 | 0.983 | -- | -- | 0.426 | 14.4 | 21.52 | 1009 | -- | -- |
| 231.94 | 0.712 | 11.5 | -0.49 | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
| 176 | 0.621 | 11.5 | -- | 1.05 | -- | -- | -- | 0.573 | 15.2 | -- | -- | -- | -- |
| 173.07 | 0.613 | 11.6 | -- | -- | 1.63 | -- | -- | 0.327 | -- | 19.8 | 111 | -- | -- |
| 238.26 | 0.72 | 11.5 | -- | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 2 | 109.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 16 |
| 4 | 111.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 7 | 111.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 14 | 112.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 15 | 112.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 39 | 114.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 40 | 114.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 45 | 114.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 47 | 114.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 53 | 115.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 54 | 115.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 61 | 115.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 66 | 115.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 72 | 115.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 96 | 116.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 129 | 116.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 132 | 116.40 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 140 | 116.46 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 154 | 116.59 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 155 | 116.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 165 | 116.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 175 | 116.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 216 | 116.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 232 | 116.93 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 281 | 117.12 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 346 | 117.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 351 | 117.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 356 | 117.45 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 368 | 117.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 406 | 117.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 423 | 117.62 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 446 | 117.69 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 465 | 117.75 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 527 | 117.91 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 536 | 117.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 537 | 117.94 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 590 | 118.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 596 | 118.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 598 | 118.11 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 646 | 118.26 | radiation | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 651 | 118.27 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 654 | 118.27 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 712 | 118.46 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 750 | 118.54 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 834 | 118.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 839 | 118.69 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 856 | 118.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 896 | 118.81 | radiation | 40 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 908 | 118.84 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 2 |