BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0686600 Os06g0686600|AK071855
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88 72 6e-14
AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125 52 5e-08
AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106 51 1e-07
AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111 50 2e-07
AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128 48 1e-06
AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103 46 4e-06
AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111 45 5e-06
AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117 45 8e-06
>AT4G09890.1 | chr4:6218501-6218764 FORWARD LENGTH=88
Length = 87
Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 4/55 (7%)
Query: 41 FNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFS----DIRYG 91
FNGP DPE KR++RVA+YN+FAT+ +LKST+++SFKWIK+KFS IRY
Sbjct: 32 FNGPCINTDPEMKRKKRVASYNLFATEEKLKSTLKNSFKWIKNKFSGDDNSIRYN 86
>AT3G05725.1 | chr3:1692548-1693153 FORWARD LENGTH=125
Length = 124
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 48 DDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYG 91
+DPE KR+RRVA Y +++ +G++K T+R S+KWIK + S I +G
Sbjct: 80 NDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123
>AT5G11970.1 | chr5:3863289-3863606 REVERSE LENGTH=106
Length = 105
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 34/43 (79%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYG 91
DPE +R++RVA+Y ++ +G++K + R+SF+W+K +++ + YG
Sbjct: 61 DPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103
>AT3G62640.1 | chr3:23166511-23166843 REVERSE LENGTH=111
Length = 110
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYG 91
D E KR++R+A Y +A +G++KSTV+ F WIK ++S I +G
Sbjct: 68 DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110
>AT1G72720.1 | chr1:27376903-27377286 REVERSE LENGTH=128
Length = 127
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYG 91
+ E +R++RVA+YNV+ +GR+K +++ SFKW K S+ YG
Sbjct: 83 EAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125
>AT3G13910.1 | chr3:4591124-4591432 REVERSE LENGTH=103
Length = 102
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIK 82
DPE++R+RRVA Y V++ + ++K ++R SFKW K
Sbjct: 63 DPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96
>AT2G47480.1 | chr2:19484207-19484539 REVERSE LENGTH=111
Length = 110
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDI 88
D E KR++R+A Y + +G++KST+++ F+WIK+K I
Sbjct: 67 DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQI 106
>AT2G19460.1 | chr2:8431581-8431931 FORWARD LENGTH=117
Length = 116
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 49 DPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSK 84
DP+ +R++RV +Y + +G+LK + R SFKWIK K
Sbjct: 75 DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDK 110
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,422,001
Number of extensions: 30476
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 8
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)