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Os06g0677600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Like-Sm ribonucleoprotein, core family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.37 (0.0168) R2 : 0.462
β1 : 1.16 (0.0616) R2dD : 0.438 R2D : 0.325
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.334 (0.0359) R2dN8 : 0.137 R2N8 : 0.024
σ : 0.316
deviance : 45.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.8 0.289 9.32 1.66 0.0139 -0.487 0.773 1.2 0.482 18.3 24.4 1481 -- --
38.07 0.287 9.34 1.36 0.0105 -0.385 0.776 -- 0.461 18.4 22.89 7239 -- --
38.29 0.288 9.33 1.57 0.135 -0.504 -- 0.994 0.46 0.466 24.49 1334 -- --
38.63 0.289 9.35 1.33 0.115 -0.396 -- -- 0.434 0.213 24.99 7023 -- --
39.29 0.292 9.32 1.64 -- -0.491 -- 1.17 0.48 -- 24.53 1475 -- --
43.98 0.311 9.37 1.17 0.0167 -- 0.807 -- 0.332 18.2 -- -- -- --
45.06 0.314 9.37 1.16 0.0942 -- -- -- 0.333 23.4 -- -- -- --
39.37 0.292 9.36 1.32 -- -0.418 -- -- 0.374 -- 25.37 5818 -- --
79.47 0.415 9.41 -- 0.124 -0.147 -- -- 0.171 23.5 30.31 5471 -- --
45.61 0.316 9.37 1.16 -- -- -- -- 0.334 -- -- -- -- --
80.63 0.42 9.4 -- 0.108 -- -- -- 0.204 0.12 -- -- -- --
80.34 0.417 9.41 -- -- -0.146 -- -- 0.184 -- 30.1 5863 -- --
81.37 0.421 9.4 -- -- -- -- -- 0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.21 humidity 90.0 720 > th dose dependent rect. 6 18
5 37.43 radiation 10.0 1440 < th dose dependent rect. 18 10
6 37.43 temperature 25.0 720 > th dose dependent rect. 19 13
8 37.46 humidity 60.0 1440 > th dose dependent rect. 18 1
10 37.49 temperature 25.0 1440 > th dose dependent rect. 16 1
11 37.49 temperature 25.0 1440 > th dose dependent rect. 14 5
14 37.51 radiation 10.0 1440 < th dose dependent rect. 18 7
21 37.55 temperature 25.0 1440 > th dose dependent rect. 14 12
41 37.58 radiation 30.0 1440 < th dose independent rect. 19 13
55 37.61 humidity 90.0 720 > th dose dependent rect. 21 2
56 37.61 humidity 90.0 720 > th dose dependent rect. 20 4
74 37.63 temperature 25.0 1440 > th dose dependent sin 16 NA
75 37.63 humidity 90.0 1440 < th dose dependent rect. 18 1
83 37.65 radiation 30.0 1440 < th dose independent rect. 21 11
85 37.65 temperature 25.0 1440 > th dose dependent rect. 18 1
137 37.75 radiation 30.0 1440 < th dose independent rect. 17 15
187 37.83 temperature 25.0 1440 > th dose dependent rect. 23 20
223 37.86 temperature 20.0 720 > th dose dependent sin 10 NA
224 37.86 temperature 25.0 1440 > th dose dependent no NA NA
241 37.86 temperature 25.0 1440 > th dose dependent rect. 3 23
246 37.86 radiation 1.0 1440 < th dose dependent rect. 18 23
268 37.88 temperature 25.0 1440 > th dose dependent rect. 4 15
313 37.90 temperature 25.0 1440 > th dose dependent rect. 18 23
327 37.93 temperature 10.0 720 > th dose dependent rect. 17 16
331 37.94 temperature 25.0 720 > th dose dependent rect. 20 5
351 37.97 radiation 1.0 1440 < th dose dependent rect. 18 2
396 38.05 radiation 30.0 1440 > th dose independent rect. 7 1
432 38.09 humidity 80.0 1440 < th dose independent rect. 7 14
443 38.10 humidity 50.0 1440 > th dose dependent rect. 16 7
447 38.11 humidity 80.0 1440 > th dose independent rect. 7 15
505 38.18 humidity 80.0 14400 > th dose independent rect. 17 1
509 38.19 radiation 1.0 4320 < th dose independent rect. 18 10
524 38.20 temperature 20.0 270 > th dose dependent rect. 23 9
527 38.21 temperature 10.0 720 > th dose dependent sin 11 NA
533 38.21 temperature 10.0 720 > th dose dependent rect. 17 18
534 38.22 radiation 1.0 4320 < th dose independent rect. 18 7
554 38.26 humidity 90.0 1440 < th dose dependent rect. 16 5
568 38.27 radiation 1.0 1440 < th dose dependent rect. 7 23
585 38.29 humidity 70.0 1440 > th dose dependent rect. 6 17
587 38.30 radiation 1.0 4320 < th dose independent rect. 18 2
590 38.30 radiation 1.0 1440 < th dose dependent sin 0 NA
597 38.30 radiation 1.0 1440 < th dose dependent rect. 6 19
604 38.30 radiation 1.0 1440 < th dose dependent rect. 21 23
609 38.31 radiation 1.0 1440 < th dose independent rect. 18 22
611 38.31 radiation 1.0 1440 < th dose dependent no NA NA
619 38.31 radiation 1.0 1440 < th dose dependent rect. 22 21
628 38.31 radiation 1.0 1440 < th dose dependent rect. 9 23
635 38.32 humidity 90.0 14400 > th dose independent rect. 22 1
637 38.32 humidity 80.0 14400 < th dose independent rect. 16 2
647 38.32 radiation 1.0 1440 < th dose dependent rect. 24 19
653 38.32 radiation 1.0 1440 < th dose dependent rect. 11 21
662 38.33 radiation 30.0 1440 < th dose independent rect. 6 2
664 38.33 radiation 1.0 1440 > th dose independent rect. 18 23
673 38.33 radiation 1.0 1440 < th dose dependent rect. 5 17
689 38.34 radiation 1.0 4320 > th dose independent rect. 18 1
705 38.34 radiation 1.0 1440 < th dose dependent rect. 5 14
710 38.34 radiation 1.0 1440 < th dose dependent rect. 2 17
779 38.38 radiation 30.0 1440 < th dose independent rect. 2 6
812 38.40 humidity 90.0 14400 < th dose independent rect. 21 2
822 38.41 humidity 80.0 43200 > th dose independent rect. 3 1
851 38.43 temperature 30.0 4320 < th dose independent rect. 15 1
852 38.43 precipitation 0.1 4320 > th dose independent rect. 15 11
871 38.44 humidity 90.0 14400 > th dose dependent rect. 21 3
881 38.45 humidity 80.0 43200 < th dose independent rect. 23 2
884 38.45 humidity 90.0 14400 > th dose dependent rect. 22 1
894 38.46 humidity 80.0 43200 > th dose independent rect. 23 5
895 38.46 humidity 80.0 43200 < th dose independent rect. 22 6
896 38.46 precipitation 0.1 4320 < th dose independent rect. 15 8
907 38.46 humidity 80.0 14400 > th dose dependent rect. 18 1
915 38.46 precipitation 0.1 4320 < th dose dependent rect. 15 8
927 38.47 temperature 30.0 4320 > th dose independent rect. 15 1
957 38.48 humidity 80.0 43200 < th dose independent rect. 3 1
964 38.48 precipitation 0.1 4320 > th dose independent rect. 15 8
968 38.48 humidity 50.0 1440 > th dose dependent sin 16 NA
988 38.49 radiation 1.0 1440 > th dose independent rect. 7 23