BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0677600 Os06g0677600|AK063252
         (116 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18372.1  | chr4:10151349-10151687 REVERSE LENGTH=113          122   5e-29

>AT4G18372.1 | chr4:10151349-10151687 REVERSE LENGTH=113
          Length = 112

 Score =  122 bits (305), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 76/105 (72%), Gaps = 7/105 (6%)

Query: 10  AETTGGGGSSPHVEKLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTXXX 69
           A T+ G    P + +LRK+LFR+MLVG+ DGR+FLG FHC+DKQGNI+LQD VEYR+   
Sbjct: 13  ASTSEGSDFDP-ISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRS--- 68

Query: 70  XXXXXXXXXXXXEQRGLGLILIPAACRSSCHVDCAVEESMSLLSL 114
                       EQR LG+ILIP++CR+SCHVDC+++E +SL+ L
Sbjct: 69  ---IRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,210,488
Number of extensions: 69654
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)