Os06g0675200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0675200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.38 | 0.411 | 2.92 | -0.185 | 0.128 | -0.275 | -0.413 | 0.5 | -0.0432 | 7.07 | 18.79 | 4370 | -- | -- |
| 76.55 | 0.408 | 2.92 | -0.151 | 0.127 | -0.305 | -0.445 | -- | -0.0408 | 6.69 | 15.97 | 4460 | -- | -- |
| 76.77 | 0.408 | 2.92 | -0.206 | 0.125 | -0.291 | -- | 0.573 | -0.0446 | 7.26 | 13.68 | 4428 | -- | -- |
| 77.01 | 0.409 | 2.92 | -0.155 | 0.124 | -0.291 | -- | -- | -0.0364 | 7.56 | 16.69 | 4444 | -- | -- |
| 77.61 | 0.41 | 2.92 | -0.198 | -- | -0.291 | -- | 0.557 | -0.0432 | -- | 13 | 4422 | -- | -- |
| 77.96 | 0.414 | 2.91 | -0.16 | 0.133 | -- | -0.4 | -- | 0.0135 | 7.29 | -- | -- | -- | -- |
| 78.33 | 0.414 | 2.91 | -0.168 | 0.134 | -- | -- | -- | 0.015 | 8.19 | -- | -- | -- | -- |
| 77.87 | 0.411 | 2.92 | -0.152 | -- | -0.305 | -- | -- | -0.0377 | -- | 15.68 | 4434 | -- | -- |
| 77.63 | 0.41 | 2.92 | -- | 0.128 | -0.288 | -- | -- | -0.0188 | 7.51 | 20 | 4434 | -- | -- |
| 79.31 | 0.416 | 2.91 | -0.167 | -- | -- | -- | -- | 0.0165 | -- | -- | -- | -- | -- |
| 79.07 | 0.416 | 2.9 | -- | 0.133 | -- | -- | -- | 0.0337 | 8.28 | -- | -- | -- | -- |
| 78.48 | 0.413 | 2.92 | -- | -- | -0.294 | -- | -- | -0.0115 | -- | 20 | 4429 | -- | -- |
| 80.05 | 0.418 | 2.91 | -- | -- | -- | -- | -- | 0.035 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.03 | humidity | 80 | 10 | < th | dose independent | rect. | 3 | 3 |
| 14 | 70.03 | humidity | 80 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 25 | 70.04 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 35 | 70.04 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 55 | 71.31 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 65 | 71.31 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 75 | 71.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 76 | 71.56 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 3 |
| 78 | 71.56 | humidity | 80 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 116 | 72.57 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 122 | 72.94 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 125 | 73.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 126 | 73.13 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 132 | 73.18 | humidity | 80 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 142 | 73.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 143 | 73.23 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 1 |
| 205 | 73.43 | radiation | 10 | 10 | < th | dose independent | sin | 12 | NA |
| 221 | 73.60 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 7 |
| 235 | 73.73 | radiation | 1 | 30 | > th | dose dependent | rect. | 12 | 22 |
| 236 | 73.74 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 251 | 73.89 | humidity | 70 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 263 | 73.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 277 | 74.00 | wind | 1 | 30 | < th | dose independent | rect. | 9 | 15 |
| 310 | 74.20 | wind | 1 | 30 | > th | dose independent | sin | 19 | NA |
| 312 | 74.22 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 20 |
| 315 | 74.24 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 318 | 74.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 320 | 74.25 | radiation | 20 | 30 | > th | dose independent | rect. | 12 | 22 |
| 339 | 74.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 340 | 74.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 347 | 74.28 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 350 | 74.29 | radiation | 40 | 30 | > th | dose dependent | rect. | 12 | 22 |
| 354 | 74.30 | humidity | 60 | 90 | < th | dose independent | rect. | 15 | 19 |
| 360 | 74.32 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 20 |
| 364 | 74.34 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 366 | 74.34 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 381 | 74.37 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 416 | 74.48 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 419 | 74.48 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 493 | 74.74 | radiation | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 503 | 74.77 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 518 | 74.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 519 | 74.78 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 557 | 74.81 | radiation | 20 | 30 | > th | dose independent | rect. | 16 | 16 |
| 562 | 74.82 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 596 | 74.87 | radiation | 20 | 30 | > th | dose independent | rect. | 7 | 1 |
| 639 | 74.89 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 1 |
| 646 | 74.90 | humidity | 60 | 10 | < th | dose independent | sin | 11 | NA |
| 654 | 74.91 | radiation | 1 | 10 | > th | dose dependent | sin | 12 | NA |
| 664 | 74.93 | humidity | 60 | 10 | > th | dose independent | sin | 11 | NA |
| 666 | 74.93 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 738 | 74.99 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 740 | 74.99 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 762 | 75.03 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 800 | 75.03 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 19 |
| 802 | 75.03 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 869 | 75.04 | radiation | 40 | 30 | > th | dose independent | sin | 12 | NA |
| 938 | 75.05 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 958 | 75.06 | radiation | 20 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 964 | 75.07 | radiation | 20 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 985 | 75.09 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 986 | 75.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 987 | 75.10 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |