BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0675200 Os06g0675200|AK060681
         (412 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79060.1  | chr1:29741873-29743063 FORWARD LENGTH=397           60   2e-09

>AT1G79060.1 | chr1:29741873-29743063 FORWARD LENGTH=397
          Length = 396

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 61/130 (46%), Gaps = 27/130 (20%)

Query: 246 GHDHDDIPRLSLDS------------------------AADPNPPRIRLVXXXXXXXXXX 281
           GHDH+D+PRLSLD+                        + +PNPPR+RLV          
Sbjct: 207 GHDHEDLPRLSLDAERPNQNHIINLNHNLTANPFAPARSLNPNPPRMRLVNHSTSGTGGG 266

Query: 282 XXXXXXXXXXXXXXXXXXXXXXCLSVDSPRMNSSGKIVFQGLERSSSSPCTLHAAAKP-R 340
                                  +SVDSPR+NSSGKIVFQ LERSSSSP + +      R
Sbjct: 267 RVGRSPMRRSGGETSAIMNRG--VSVDSPRLNSSGKIVFQNLERSSSSPSSFNGGTSGYR 324

Query: 341 SRAVDRSYSS 350
            R ++RSYSS
Sbjct: 325 HRGMERSYSS 334



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,638,857
Number of extensions: 91191
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,337,553
Effective search space: 2592978983
Effective search space used: 2592978983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)