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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0662600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pollen allergen Lol p2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0168) R2 : 0.0214
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0353) R2dN8 : 0.0276 R2N8 : 0.0214
σ : 0.316
deviance : 45.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43 0.308 3.12 0.909 0.0685 0.483 -0.16 -3.6 -0.0526 6.21 29.94 1371 -- --
44.8 0.312 3.22 0.14 0.0703 0.11 -0.105 -- -0.0975 5.4 29.3 3490 -- --
43.05 0.306 3.12 0.904 0.0696 0.48 -- -3.58 -0.0523 7.01 29.93 1370 -- --
44.47 0.311 3.2 0.163 0.0811 0.122 -- -- -0.0608 7.25 29.45 8806 -- --
43.3 0.306 3.12 0.914 -- 0.484 -- -3.63 -0.0502 -- 29.9 1370 -- --
45.03 0.315 3.21 0.114 0.0808 -- -0.117 -- -0.101 7.1 -- -- -- --
45.06 0.314 3.21 0.113 0.0805 -- -- -- -0.1 7.57 -- -- -- --
44.69 0.311 3.21 0.139 -- 0.139 -- -- -0.0632 -- 29.92 9089 -- --
44.83 0.312 3.21 -- 0.0804 0.12 -- -- -0.0841 7.35 30.4 8929 -- --
45.41 0.315 3.22 0.114 -- -- -- -- -0.0988 -- -- -- -- --
45.39 0.315 3.22 -- 0.0815 -- -- -- -0.113 7.48 -- -- -- --
45.19 0.313 3.21 -- -- 0.122 -- -- -0.0821 -- 30.4 9031 -- --
45.75 0.316 3.22 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.30 precipitation 0.1 90 > th dose independent rect. 21 2
2 36.30 precipitation 0.1 90 > th dose dependent rect. 21 2
9 38.86 temperature 25.0 30 > th dose independent rect. 21 1
10 39.51 temperature 25.0 30 > th dose independent rect. 20 3
15 39.97 humidity 90.0 90 > th dose dependent rect. 20 1
20 41.30 wind 1.0 270 < th dose independent rect. 18 2
21 41.30 wind 1.0 270 < th dose dependent rect. 18 2
22 41.32 humidity 90.0 10 > th dose dependent rect. 22 1
25 41.33 precipitation 0.1 270 > th dose independent rect. 18 1
27 41.33 precipitation 0.1 270 > th dose dependent rect. 18 1
28 41.36 humidity 80.0 14400 < th dose dependent rect. 7 1
30 41.48 temperature 20.0 10 > th dose dependent rect. 20 3
34 41.52 atmosphere 1005.0 30 > th dose independent rect. 20 3
35 41.52 precipitation 0.1 270 > th dose dependent rect. 18 4
38 41.54 precipitation 0.1 270 > th dose independent rect. 18 4
42 41.55 wind 1.0 270 < th dose independent rect. 16 3
48 41.57 humidity 80.0 14400 < th dose dependent rect. 3 6
51 41.58 precipitation 0.1 270 > th dose dependent rect. 18 9
52 41.59 humidity 90.0 270 > th dose dependent rect. 18 1
65 41.68 precipitation 0.1 270 > th dose independent rect. 18 9
87 41.81 wind 1.0 270 < th dose dependent rect. 16 3
105 41.92 humidity 90.0 270 > th dose dependent rect. 18 3
108 41.99 atmosphere 995.0 10 > th dose independent rect. 10 10
121 42.13 humidity 70.0 14400 > th dose independent rect. 8 1
122 42.14 wind 5.0 14400 < th dose independent rect. 11 1
130 42.25 wind 1.0 10 > th dose independent rect. 10 10
133 42.26 humidity 70.0 14400 > th dose independent rect. 24 9
135 42.27 humidity 70.0 14400 > th dose independent rect. 4 5
141 42.27 wind 7.0 30 < th dose independent rect. 20 14
151 42.30 precipitation 0.1 10 < th dose independent rect. 10 10
152 42.30 precipitation 0.1 10 < th dose dependent rect. 10 10
154 42.32 temperature 10.0 10 > th dose independent rect. 10 10
156 42.32 atmosphere 1015.0 10 < th dose independent rect. 10 10
158 42.32 temperature 10.0 10 > th dose independent rect. 20 14
159 42.32 humidity 50.0 10 > th dose independent rect. 20 14
160 42.32 atmosphere 995.0 10 > th dose independent rect. 20 14
161 42.33 precipitation 0.1 30 < th dose independent rect. 20 14
162 42.33 precipitation 0.1 30 < th dose dependent rect. 20 14
163 42.34 humidity 80.0 14400 < th dose independent rect. 7 1
171 42.34 atmosphere 1000.0 30 > th dose dependent rect. 20 3
172 42.35 wind 5.0 14400 > th dose independent rect. 11 1
174 42.35 wind 9.0 10 < th dose independent rect. 10 10
176 42.35 temperature 10.0 1440 > th dose independent rect. 11 10
179 42.35 temperature 10.0 1440 > th dose independent rect. 21 14
183 42.35 atmosphere 995.0 1440 > th dose independent rect. 21 14
190 42.39 atmosphere 995.0 30 > th dose independent rect. 23 21
203 42.46 wind 1.0 10 > th dose independent rect. 20 3
209 42.49 wind 1.0 90 > th dose independent rect. 20 1
211 42.49 humidity 90.0 270 > th dose dependent rect. 14 7
221 42.52 wind 5.0 90 < th dose independent rect. 20 1
222 42.52 wind 5.0 30 < th dose independent rect. 20 3
227 42.56 precipitation 0.1 270 > th dose dependent rect. 15 5
231 42.57 humidity 70.0 30 > th dose dependent rect. 20 3
241 42.59 radiation 40.0 10 < th dose independent rect. 23 21
262 42.62 humidity 90.0 10 > th dose independent rect. 22 1
271 42.63 atmosphere 1000.0 90 > th dose dependent rect. 20 1
272 42.64 atmosphere 1015.0 30 < th dose independent rect. 20 14
284 42.67 precipitation 0.1 30 < th dose independent rect. 20 3
287 42.67 precipitation 0.1 30 < th dose dependent rect. 20 3
291 42.68 atmosphere 1005.0 30 > th dose independent rect. 23 8
307 42.73 wind 3.0 14400 > th dose dependent rect. 11 1
313 42.74 wind 1.0 14400 < th dose dependent rect. 6 1
318 42.75 precipitation 0.1 90 < th dose independent rect. 20 1
321 42.75 precipitation 0.1 90 < th dose dependent rect. 20 1
322 42.75 radiation 10.0 4320 < th dose dependent rect. 21 3
330 42.77 atmosphere 995.0 90 > th dose independent rect. 21 23
333 42.78 humidity 80.0 90 > th dose independent rect. 20 1
341 42.79 humidity 80.0 30 > th dose independent rect. 20 3
354 42.80 wind 9.0 1440 < th dose independent rect. 21 3
355 42.80 humidity 70.0 4320 > th dose independent rect. 21 3
366 42.82 temperature 10.0 1440 > th dose independent rect. 21 3
369 42.82 temperature 30.0 1440 < th dose independent rect. 21 3
374 42.82 humidity 50.0 1440 > th dose independent rect. 21 3
380 42.82 atmosphere 995.0 1440 > th dose independent rect. 21 3
381 42.82 radiation 1.0 1440 < th dose independent rect. 21 3
403 42.82 temperature 10.0 1440 > th dose independent rect. 24 21
420 42.83 temperature 30.0 30 < th dose independent rect. 20 14
422 42.83 radiation 1.0 30 < th dose dependent rect. 20 3
429 42.84 temperature 10.0 30 > th dose independent rect. 20 3
431 42.84 temperature 30.0 30 < th dose independent rect. 20 3
432 42.84 humidity 50.0 30 > th dose independent rect. 20 3
435 42.84 atmosphere 995.0 30 > th dose independent rect. 20 3
436 42.84 atmosphere 1010.0 30 < th dose independent rect. 20 3
438 42.84 radiation 1.0 30 < th dose independent rect. 20 3
444 42.84 wind 9.0 30 < th dose independent rect. 23 21
445 42.84 temperature 10.0 30 > th dose independent rect. 23 21
454 42.85 temperature 30.0 1440 < th dose independent rect. 14 21
455 42.85 temperature 25.0 270 < th dose dependent rect. 5 2
456 42.85 wind 9.0 30 < th dose dependent rect. 20 3
460 42.85 humidity 50.0 4320 > th dose dependent rect. 2 7
474 42.86 temperature 30.0 1440 > th dose independent rect. 14 21
475 42.87 temperature 10.0 90 > th dose independent rect. 20 1
477 42.87 temperature 30.0 90 < th dose independent rect. 20 1
478 42.87 humidity 50.0 90 > th dose independent rect. 20 1
481 42.87 atmosphere 995.0 90 > th dose independent rect. 20 1
482 42.87 atmosphere 1010.0 90 < th dose independent rect. 20 1
484 42.87 radiation 1.0 90 < th dose independent rect. 20 1
491 42.87 temperature 10.0 90 > th dose independent rect. 21 23
492 42.87 radiation 1.0 90 < th dose dependent rect. 20 1
497 42.88 temperature 20.0 270 < th dose independent rect. 5 2
527 42.89 humidity 50.0 4320 < th dose independent rect. 15 2
548 42.91 temperature 10.0 30 > th dose dependent rect. 10 10
549 42.91 radiation 1.0 90 < th dose dependent rect. 22 22
550 42.92 humidity 50.0 4320 < th dose independent rect. 13 4
562 42.93 temperature 10.0 30 > th dose dependent rect. 23 8
579 42.95 wind 9.0 90 < th dose independent rect. 21 23
583 42.96 humidity 80.0 30 < th dose independent rect. 5 5
588 42.96 temperature 30.0 1440 < th dose independent rect. 14 15
593 42.97 temperature 30.0 1440 < th dose independent sin 12 NA
595 42.97 wind 1.0 14400 < th dose independent rect. 6 1
597 42.97 temperature 30.0 1440 < th dose independent rect. 14 8
602 42.97 radiation 40.0 10 < th dose independent rect. 10 10
621 42.98 temperature 30.0 1440 > th dose independent rect. 15 4
624 42.98 temperature 30.0 1440 < th dose independent rect. 14 5
646 42.98 radiation 10.0 10 < th dose independent rect. 23 11
649 42.98 humidity 80.0 30 < th dose independent rect. 22 12
676 42.99 precipitation 0.1 14400 > th dose independent rect. 24 8
679 42.99 humidity 80.0 30 < th dose independent rect. 24 10
707 42.99 humidity 50.0 4320 > th dose dependent rect. 23 11
709 43.00 temperature 30.0 1440 > th dose independent sin 12 NA
712 43.00 precipitation 0.1 14400 < th dose independent rect. 24 8
720 43.00 wind 1.0 90 > th dose independent rect. 20 14
728 43.00 radiation 1.0 90 < th dose independent rect. 22 22
733 43.00 precipitation 0.1 14400 < th dose dependent rect. 24 8
735 43.00 humidity 80.0 4320 > th dose dependent rect. 2 11
737 43.00 humidity 50.0 4320 > th dose dependent rect. 23 13
740 43.01 humidity 90.0 270 > th dose independent rect. 18 1
749 43.01 wind 7.0 14400 < th dose dependent rect. 11 1
776 43.03 humidity 50.0 4320 > th dose independent rect. 13 4
778 43.03 precipitation 0.1 270 > th dose independent rect. 15 5
781 43.03 humidity 90.0 4320 < th dose independent rect. 3 6
810 43.04 humidity 50.0 4320 > th dose independent rect. 15 2
894 43.06 temperature 30.0 1440 > th dose dependent rect. 15 1
903 43.07 atmosphere 1015.0 4320 > th dose independent rect. 10 1
904 43.07 atmosphere 1015.0 4320 < th dose independent rect. 11 1
932 43.07 temperature 30.0 1440 < th dose independent rect. 2 20
979 43.08 temperature 30.0 1440 < th dose independent rect. 8 14
987 43.08 temperature 30.0 1440 < th dose independent rect. 3 16