BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0662600 Os06g0662600|Os06g0662600
         (117 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20750.1  | chr2:8941185-8942430 FORWARD LENGTH=272             49   8e-07
AT4G28250.1  | chr4:14000446-14001945 REVERSE LENGTH=265           46   3e-06
AT1G65680.1  | chr1:24427266-24428399 FORWARD LENGTH=274           46   5e-06

>AT2G20750.1 | chr2:8941185-8942430 FORWARD LENGTH=272
          Length = 271

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 25  EVAFKVGEGSSGKSLELVTNVA-----ISEVEIKEKGGKDWVALKESSTNTWSLKSEAAL 79
            +AF V  GS+   L L+         I  + I++ G K+W+++K      W +  E  L
Sbjct: 170 NIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCI-VEGPL 228

Query: 80  KGPFSVRF-LVKNGGYRVVDDVIPESFTAGSEYKSGIN 116
           KGPFSV+   + N       DVIP ++   + Y S +N
Sbjct: 229 KGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLN 266



>AT4G28250.1 | chr4:14000446-14001945 REVERSE LENGTH=265
          Length = 264

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 25  EVAFKVGEGSSGKSLELVTNVA-----ISEVEIKEKGGKDWVALKESSTNTWSLKSEAAL 79
            +AF V EGS+   L L+         I  + I++ G ++W+ +K      W +     L
Sbjct: 163 NIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANWCIIG-GPL 221

Query: 80  KGPFSVRFLVKNGGYRV-VDDVIPESFTAGSEYKSGIN 116
           KGPFS++    + G  +   DV+P ++   + Y S +N
Sbjct: 222 KGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLN 259



>AT1G65680.1 | chr1:24427266-24428399 FORWARD LENGTH=274
          Length = 273

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 26  VAFKVGEGSSGKSLELVTNVA-----ISEVEIKEKGGKD-WVALKESSTNTWSLKSEAAL 79
           V F+V +GS+  S  ++         I  +E+K+    D W+++ +S    W L   + L
Sbjct: 175 VTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPL 234

Query: 80  KGPFSVRFL-VKNGGYRVVDDVIPESFTAGSEYKSGINI 117
           + P S+R   +++G   V  +VIP ++  G+ YKS +N 
Sbjct: 235 RAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,264,496
Number of extensions: 80750
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 105 (45.1 bits)