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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0651900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0057 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.3 (0.0739) R2 : 0.865
β1 : -2.77 (0.405) R2dD : 0.0368 R2D : 0.232
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.36 (0.29) R2dE : 0.613 R2E : 0.83
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.254 (0.198) R2dN8 : 0.00118 R2N8 : 0.0183
σ : 1.26
deviance : 727.34
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.38
memory length : 28603
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.28
open length of G : 2.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
823.69 1.35 5.16 -4.2 0.441 4.72 1.79 -11.6 -0.861 1.92 24.98 5592 6.97 4.05
761.34 1.29 5.62 -4.95 0.37 6 2.15 -- -1.07 1.26 22.9 30001 7.68 2.42
784.01 1.3 5.16 -4.2 0.441 4.72 -- -11.6 -0.861 1.92 24.98 21321 6.97 4.05
725.62 1.25 5.37 -3.25 0.436 7.15 -- -- -0.277 1.43 22.4 29376 7.28 2.2
700.86 1.23 4.54 -2.14 -- 5.4 -- -14.5 0.297 -- 25 20509 8.53 4.2
1735.9 1.95 6.13 -10.9 0.271 -- 1.41 -- -3.76 2.21 -- -- -- --
1743.19 1.96 6.13 -10.9 0.28 -- -- -- -3.77 2.8 -- -- -- --
727.34 1.26 5.3 -2.77 -- 7.36 -- -- -0.254 -- 22.38 28603 7.28 2.1
785.64 1.31 5.34 -- 0.284 8.24 -- -- -0.12 1.64 21.8 28615 7.12 1.99
1747.74 1.95 6.13 -10.9 -- -- -- -- -3.76 -- -- -- -- --
4869.89 3.26 5.86 -- 0.0713 -- -- -- -2.56 1.37 -- -- -- --
765.13 1.29 5.29 -- -- 8.9 -- -- 0.2 -- 21.9 30055 7.23 1.85
4870.2 3.26 5.86 -- -- -- -- -- -2.56 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 676.50 radiation 10.0 43200 < th dose independent rect. 5 1
2 678.94 radiation 30.0 43200 < th dose independent rect. 16 15
3 679.78 radiation 1.0 43200 < th dose dependent rect. 6 5
7 681.72 radiation 10.0 43200 < th dose independent rect. 1 5
8 681.76 radiation 10.0 43200 < th dose independent rect. 19 11
13 681.84 radiation 40.0 43200 < th dose independent rect. 15 17
17 682.78 radiation 30.0 43200 < th dose independent rect. 16 1
18 683.43 radiation 30.0 43200 < th dose independent rect. 16 10
21 684.04 radiation 30.0 43200 < th dose independent rect. 16 7
23 684.26 radiation 30.0 43200 < th dose independent rect. 16 5
45 686.05 radiation 1.0 43200 < th dose dependent rect. 9 3
53 688.68 radiation 1.0 43200 > th dose independent rect. 9 3
54 688.84 radiation 1.0 43200 < th dose independent rect. 9 3
58 691.30 radiation 10.0 43200 < th dose independent rect. 17 4
61 691.32 radiation 10.0 43200 < th dose independent rect. 17 9
82 696.83 wind 1.0 43200 < th dose dependent rect. 22 7
83 697.36 wind 1.0 43200 < th dose dependent rect. 20 9
84 697.95 wind 1.0 43200 < th dose dependent rect. 19 11
91 701.86 radiation 40.0 43200 < th dose independent rect. 5 3
101 703.13 radiation 40.0 43200 < th dose independent rect. 24 8
111 706.60 radiation 30.0 43200 > th dose dependent rect. 16 16
113 708.60 temperature 20.0 43200 > th dose independent rect. 14 1
123 712.81 temperature 20.0 43200 < th dose independent rect. 14 1
138 717.63 radiation 30.0 43200 > th dose dependent rect. 7 1
166 722.98 temperature 20.0 43200 < th dose dependent rect. 22 1
176 725.31 radiation 1.0 43200 > th dose dependent rect. 18 12
179 726.37 humidity 70.0 43200 < th dose independent rect. 7 1
180 726.92 temperature 20.0 43200 < th dose independent rect. 5 1
210 732.44 temperature 20.0 43200 < th dose independent rect. 7 1
211 732.44 humidity 90.0 43200 > th dose dependent rect. 24 1
213 732.71 temperature 20.0 43200 > th dose independent rect. 5 1
220 734.37 radiation 10.0 43200 > th dose dependent rect. 17 1
245 735.77 temperature 20.0 43200 < th dose independent rect. 1 1
257 739.69 precipitation 0.1 43200 > th dose dependent rect. 4 1
270 740.32 temperature 20.0 43200 > th dose independent rect. 7 1
274 741.17 temperature 20.0 43200 > th dose independent rect. 1 1
276 741.47 humidity 90.0 43200 > th dose dependent rect. 23 4
277 741.49 temperature 20.0 43200 < th dose independent rect. 1 5
312 744.13 radiation 10.0 43200 < th dose dependent rect. 18 12
319 744.70 temperature 20.0 43200 > th dose independent rect. 1 5
375 748.12 temperature 20.0 43200 < th dose independent rect. 22 1
428 751.32 temperature 20.0 43200 < th dose dependent rect. 2 1
439 751.46 wind 1.0 43200 < th dose dependent sin 12 NA
468 753.06 precipitation 0.1 43200 > th dose independent rect. 4 1
488 754.17 precipitation 0.1 43200 < th dose independent rect. 8 2
489 754.17 precipitation 0.1 43200 < th dose dependent rect. 8 2
490 754.29 temperature 25.0 14400 > th dose independent rect. 8 3
513 755.80 temperature 20.0 43200 < th dose dependent rect. 11 16
516 755.84 temperature 20.0 43200 < th dose dependent rect. 13 14
519 755.97 precipitation 0.1 43200 < th dose independent rect. 4 1
520 755.97 precipitation 0.1 43200 < th dose dependent rect. 4 1
538 756.92 temperature 25.0 14400 < th dose independent rect. 8 3
542 757.33 precipitation 0.1 43200 > th dose independent rect. 8 2
543 757.33 precipitation 0.1 43200 > th dose dependent rect. 8 2
590 760.05 temperature 20.0 43200 < th dose dependent rect. 7 20
595 760.31 temperature 20.0 14400 > th dose dependent rect. 5 1
598 760.61 humidity 90.0 43200 > th dose dependent rect. 13 16
605 760.97 temperature 20.0 43200 < th dose dependent sin 15 NA
618 761.81 radiation 1.0 43200 > th dose dependent rect. 4 2
692 765.32 temperature 20.0 14400 > th dose dependent rect. 2 5
694 765.47 temperature 20.0 14400 > th dose dependent rect. 2 1
696 765.58 radiation 10.0 43200 < th dose dependent rect. 4 1
733 766.87 temperature 20.0 43200 < th dose dependent rect. 21 20
780 768.04 radiation 10.0 43200 < th dose dependent rect. 19 10
785 768.19 radiation 10.0 43200 < th dose dependent rect. 22 7
841 769.09 temperature 20.0 43200 < th dose dependent no NA NA
844 769.10 temperature 20.0 43200 < th dose dependent rect. 13 23
904 770.23 temperature 20.0 43200 < th dose dependent rect. 2 23
927 770.98 temperature 20.0 43200 < th dose dependent rect. 7 1
950 771.55 humidity 70.0 43200 > th dose independent rect. 6 2