BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0651900 Os06g0651900|AK108564
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78 60 2e-10
AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75 59 7e-10
AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76 53 2e-08
AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55 53 3e-08
AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74 51 1e-07
AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55 49 5e-07
AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55 47 3e-06
>AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78
Length = 77
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 4 SGGCSTCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVVI 58
+ GC C E + ++++PPLGV R+G C++EF++ LT L YVPGI+Y+++ ++
Sbjct: 2 ANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIV 56
>AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75
Length = 74
Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 5 GGCSTCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVVILKTPPE 64
C E I +++LPPLGV FR G C+ EF++ LT L YVPGI+Y+++V++ + E
Sbjct: 3 SNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREE 62
>AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76
Length = 75
Score = 53.1 bits (126), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 4 SGGCSTCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVVILKTPP 63
+ C C E +++LPP+GV R+G C+ EF + LT L Y+PGI+Y+++ +
Sbjct: 2 ASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRD 61
Query: 64 EPPGIDGERPYYILA 78
E + RP Y +A
Sbjct: 62 EYFD-EYRRPIYYVA 75
>AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55
Length = 54
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 6 GCSTCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVVI 58
G T LE I +++LPP+GVF RYG C EF + LT L Y+PGI+Y+++V++
Sbjct: 2 GSETFLEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 53
>AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74
Length = 73
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 36/50 (72%)
Query: 12 ETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVVILKT 61
E + +++LPPLGV + G C+ EF++ LT L Y+PGI+Y+++V++ +
Sbjct: 10 EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQN 59
>AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55
Length = 54
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 8 STCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVV 57
+T ++ I +++LPPLGVF R+G C EF + LT L Y+PGI+Y+++V+
Sbjct: 4 ATFVDIIIAILLPPLGVFLRFG-CGVEFWICLVLTLLGYIPGIIYAIYVL 52
>AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55
Length = 54
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 8 STCLETIFSVVLPPLGVFFRYGFCSSEFVVSSALTALFYVPGIVYSVWVV 57
+T +E I +++LPPLGVF ++G C EF + LT Y+PGI+Y+++++
Sbjct: 4 ATFVEIILAIILPPLGVFLKFG-CKVEFWICLILTLFGYLPGILYALYII 52
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.145 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,066,344
Number of extensions: 70116
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)