Os06g0649900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phospholipase D/Transphosphatidylase domain containing protein.
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Os06g0649900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phospholipase D/Transphosphatidylase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.52 | 0.528 | 8.83 | -0.176 | 2.13 | -1.61 | 2.14 | 5.88 | -0.082 | 22.1 | 26.8 | 5908 | -- | -- |
| 132.97 | 0.537 | 8.95 | -0.538 | 2.27 | -1.83 | 1.97 | -- | -0.0821 | 22.2 | 21.5 | 22625 | -- | -- |
| 144.28 | 0.559 | 8.83 | -0.21 | 2.12 | -1.58 | -- | 6.01 | -0.0809 | 22 | 26.9 | 5905 | -- | -- |
| 148.71 | 0.568 | 8.94 | -0.547 | 2.16 | -1.96 | -- | -- | -0.0441 | 22.1 | 21.38 | 22617 | -- | -- |
| 414.16 | 0.948 | 8.74 | -0.0281 | -- | -1.57 | -- | 6.87 | -0.0506 | -- | 27.7 | 5878 | -- | -- |
| 196.17 | 0.657 | 9.12 | -2.4 | 2.12 | -- | 2.02 | -- | -0.823 | 22.2 | -- | -- | -- | -- |
| 212.18 | 0.682 | 9.12 | -2.48 | 2.11 | -- | -- | -- | -0.826 | 22 | -- | -- | -- | -- |
| 422.8 | 0.962 | 9.04 | -2.24 | -- | -0.868 | -- | -- | -0.746 | -- | 27.7 | 5878 | -- | -- |
| 151.34 | 0.573 | 8.93 | -- | 2.18 | -2.25 | -- | -- | 0.0636 | 22.1 | 21 | 23786 | -- | -- |
| 481.81 | 1.03 | 9.06 | -2.45 | -- | -- | -- | -- | -0.824 | -- | -- | -- | -- | -- |
| 374.35 | 0.905 | 9.06 | -- | 2.1 | -- | -- | -- | -0.55 | 22 | -- | -- | -- | -- |
| 427.88 | 0.963 | 8.87 | -- | -- | -2.23 | -- | -- | 0.0251 | -- | 19.7 | 24638 | -- | -- |
| 640.6 | 1.18 | 9 | -- | -- | -- | -- | -- | -0.552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.81 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 2 | 111.02 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 4 | 111.08 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 8 | 111.17 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 14 | 111.28 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 111.70 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 34 | 111.78 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 39 | 112.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 42 | 112.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 43 | 112.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 51 | 112.49 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 96 | 113.88 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 97 | 113.89 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 98 | 113.89 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 103 | 113.91 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 108 | 113.94 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 119 | 114.16 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 121 | 114.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 127 | 114.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 129 | 114.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 135 | 114.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 4 |
| 137 | 114.56 | temperature | 15 | 43200 | < th | dose dependent | sin | 11 | NA |
| 144 | 114.68 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 146 | 114.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 150 | 114.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 160 | 114.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 161 | 114.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 169 | 114.89 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 172 | 114.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 173 | 114.92 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 183 | 115.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 212 | 115.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 215 | 115.15 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 220 | 115.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 278 | 115.55 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 288 | 115.58 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 294 | 115.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 300 | 115.63 | humidity | 90 | 43200 | > th | dose dependent | sin | 12 | NA |
| 331 | 115.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 355 | 115.91 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 363 | 115.92 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 365 | 115.93 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 424 | 116.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 432 | 116.24 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 470 | 116.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 488 | 116.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 579 | 116.83 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 603 | 116.91 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 622 | 116.95 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 661 | 117.03 | radiation | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 716 | 117.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 742 | 117.39 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 744 | 117.40 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 765 | 117.45 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 771 | 117.47 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 835 | 117.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 892 | 117.79 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |
| 911 | 117.85 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 934 | 117.94 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 944 | 117.99 | temperature | 15 | 43200 | < th | dose independent | rect. | 21 | 16 |