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Os06g0645800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0173) R2 : 0.0423
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.0364) R2dN8 : 0.0547 R2N8 : 0.0423
σ : 0.325
deviance : 48.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.94 0.293 12.3 0.679 0.144 -0.232 -0.0804 1.06 0.0581 9.94 24.5 416 -- --
41.72 0.301 12.4 0.344 0.165 -0.156 -0.425 -- -0.0652 8.23 24.5 404 -- --
38.95 0.291 12.3 0.686 0.141 -0.235 -- 1.09 0.0607 10 24.57 427 -- --
42.05 0.302 12.4 0.339 0.171 -0.175 -- -- -0.0497 9.98 24.5 358 -- --
39.81 0.294 12.3 0.724 -- -0.29 -- 1.27 0.0829 -- 25 500 -- --
43.06 0.308 12.4 0.288 0.227 -- -0.48 -- -0.136 7.89 -- -- -- --
43.63 0.309 12.4 0.277 0.227 -- -- -- -0.134 8.57 -- -- -- --
43.44 0.307 12.3 0.359 -- -0.234 -- -- -0.0305 -- 25 500 -- --
44.87 0.312 12.4 -- 0.18 -0.127 -- -- -0.11 9.67 24.91 339 -- --
46.53 0.319 12.4 0.278 -- -- -- -- -0.132 -- -- -- -- --
45.66 0.316 12.4 -- 0.228 -- -- -- -0.165 8.48 -- -- -- --
46.47 0.318 12.4 -- -- -0.189 -- -- -0.0913 -- 24.9 483 -- --
48.57 0.325 12.4 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.73 temperature 25.0 90 > th dose independent rect. 17 15
2 36.78 temperature 25.0 10 > th dose dependent rect. 18 14
27 38.65 temperature 25.0 270 > th dose independent rect. 11 21
42 38.92 temperature 20.0 30 > th dose dependent rect. 17 11
44 38.94 temperature 25.0 720 > th dose independent rect. 16 20
46 38.96 temperature 25.0 720 < th dose independent rect. 16 19
47 38.97 temperature 25.0 720 < th dose independent rect. 16 17
54 39.02 temperature 25.0 90 < th dose independent sin 12 NA
63 39.07 temperature 25.0 90 > th dose independent rect. 17 6
65 39.08 temperature 25.0 90 > th dose independent sin 11 NA
70 39.10 temperature 25.0 4320 > th dose independent rect. 17 1
84 39.16 radiation 10.0 30 < th dose independent rect. 6 22
85 39.17 temperature 25.0 4320 < th dose independent rect. 17 1
93 39.19 temperature 25.0 10 > th dose dependent rect. 22 10
109 39.24 temperature 25.0 720 < th dose independent sin 10 NA
111 39.24 temperature 20.0 30 > th dose dependent rect. 17 6
114 39.25 temperature 25.0 270 < th dose independent rect. 10 22
143 39.35 temperature 25.0 90 > th dose independent rect. 17 10
167 39.42 temperature 10.0 30 > th dose dependent rect. 17 23
174 39.44 temperature 25.0 720 > th dose dependent sin 11 NA
181 39.47 temperature 25.0 720 > th dose independent sin 10 NA
200 39.51 temperature 25.0 270 < th dose independent rect. 18 23
201 39.52 temperature 25.0 270 > th dose independent sin 15 NA
209 39.54 temperature 25.0 1440 > th dose independent rect. 16 11
228 39.57 temperature 25.0 270 < th dose independent rect. 12 14
231 39.57 radiation 10.0 30 < th dose independent rect. 6 17
238 39.58 temperature 20.0 90 > th dose dependent rect. 17 3
239 39.58 temperature 20.0 270 > th dose dependent rect. 14 18
252 39.62 temperature 25.0 1440 > th dose independent sin 13 NA
263 39.63 temperature 25.0 10 > th dose dependent sin 11 NA
293 39.67 temperature 25.0 270 > th dose independent rect. 1 23
315 39.71 temperature 25.0 1440 < th dose independent rect. 16 11
329 39.73 temperature 25.0 270 > th dose independent no NA NA
336 39.73 temperature 25.0 270 > th dose independent rect. 3 23
338 39.73 temperature 25.0 1440 > th dose dependent rect. 21 2
347 39.74 temperature 25.0 270 < th dose independent no NA NA
356 39.75 atmosphere 1015.0 14400 < th dose independent rect. 23 1
370 39.77 atmosphere 1015.0 14400 > th dose independent rect. 23 1
375 39.77 temperature 25.0 90 < th dose independent rect. 19 12
406 39.79 temperature 20.0 270 > th dose dependent rect. 11 21
407 39.80 radiation 10.0 14400 < th dose independent rect. 18 2
412 39.80 radiation 10.0 14400 < th dose independent rect. 18 5
425 39.81 temperature 25.0 270 > th dose independent rect. 14 10
434 39.81 precipitation 0.1 43200 > th dose dependent rect. 18 1
436 39.81 radiation 20.0 14400 > th dose dependent rect. 16 16
439 39.82 radiation 30.0 14400 < th dose independent rect. 7 1
447 39.82 radiation 30.0 14400 < th dose independent rect. 19 13
455 39.82 atmosphere 1010.0 43200 < th dose dependent rect. 7 1
456 39.82 temperature 25.0 1440 > th dose dependent rect. 20 11
458 39.83 atmosphere 1005.0 43200 < th dose independent rect. 7 1
462 39.83 radiation 30.0 14400 < th dose independent rect. 3 5
467 39.83 radiation 30.0 14400 < th dose independent rect. 23 9
480 39.83 temperature 25.0 30 > th dose dependent rect. 6 2
484 39.83 temperature 25.0 1440 > th dose dependent rect. 13 19
486 39.84 precipitation 0.1 43200 > th dose independent rect. 18 1
508 39.84 temperature 25.0 270 > th dose independent rect. 21 23
531 39.85 temperature 25.0 1440 > th dose dependent rect. 11 21
557 39.87 radiation 1.0 14400 > th dose independent rect. 4 1
558 39.87 precipitation 0.1 43200 < th dose independent rect. 18 1
560 39.87 atmosphere 1005.0 43200 < th dose independent rect. 7 3
576 39.87 temperature 25.0 90 < th dose independent rect. 19 14
584 39.87 radiation 1.0 14400 > th dose dependent rect. 4 1
585 39.87 precipitation 0.1 43200 < th dose dependent rect. 18 1
601 39.88 humidity 80.0 43200 < th dose independent rect. 17 1
650 39.89 temperature 25.0 270 < th dose independent rect. 3 23
681 39.90 humidity 90.0 14400 > th dose dependent rect. 1 1
682 39.90 atmosphere 1010.0 14400 > th dose dependent rect. 23 1
684 39.90 humidity 90.0 14400 > th dose dependent rect. 24 3
753 39.92 radiation 10.0 14400 < th dose independent rect. 18 8
790 39.92 temperature 25.0 1440 > th dose dependent rect. 13 13
792 39.92 temperature 25.0 1440 > th dose dependent rect. 11 15
802 39.93 atmosphere 1005.0 43200 < th dose independent rect. 9 1
805 39.93 atmosphere 1005.0 43200 > th dose independent rect. 6 4
847 39.93 temperature 25.0 720 < th dose independent rect. 5 21
849 39.93 atmosphere 1010.0 14400 > th dose dependent rect. 1 1
867 39.93 temperature 25.0 1440 > th dose dependent rect. 19 22
870 39.94 atmosphere 1005.0 43200 > th dose independent rect. 9 1
871 39.94 radiation 10.0 14400 < th dose independent rect. 5 1
933 39.94 temperature 25.0 1440 > th dose dependent rect. 13 23
940 39.95 radiation 10.0 30 < th dose independent rect. 6 4