Os06g0638500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os06g0638500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 407.11 | 0.948 | 5.59 | -6.29 | 0.953 | 2.9 | 1.13 | -16.3 | -0.304 | 22.4 | 30 | 4228 | -- | -- |
| 434.24 | 0.971 | 5.45 | -5.04 | 1.02 | 2.23 | 1.94 | -- | -1.03 | 22.3 | 19.3 | 7629 | -- | -- |
| 411.94 | 0.945 | 5.58 | -6.3 | 0.966 | 2.96 | -- | -16.8 | -0.221 | 22.2 | 30.3 | 4240 | -- | -- |
| 423.39 | 0.958 | 5.45 | -5.12 | 1 | 1.85 | -- | -- | -0.992 | 22.3 | 19.4 | 36371 | -- | -- |
| 464.6 | 1 | 5.56 | -6.35 | -- | 3.08 | -- | -16.6 | -0.293 | -- | 30.1 | 4096 | -- | -- |
| 457.83 | 1 | 5.31 | -3.3 | 1.02 | -- | 1.2 | -- | -0.373 | 22.4 | -- | -- | -- | -- |
| 463.67 | 1.01 | 5.31 | -3.35 | 1.01 | -- | -- | -- | -0.375 | 22.3 | -- | -- | -- | -- |
| 481.3 | 1.02 | 5.43 | -5.32 | -- | 1.86 | -- | -- | -1.04 | -- | 19.3 | 36925 | -- | -- |
| 487.27 | 1.03 | 5.19 | -- | 1.25 | -2.07 | -- | -- | -0.21 | 21.5 | 35.11 | 47520 | -- | -- |
| 526.07 | 1.07 | 5.28 | -3.33 | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
| 759.14 | 1.29 | 5.22 | -- | 0.997 | -- | -- | -- | -0.00226 | 22 | -- | -- | -- | -- |
| 541.06 | 1.08 | 5.25 | -- | -- | -2.17 | -- | -- | -0.239 | -- | 35.16 | 47520 | -- | -- |
| 819.05 | 1.34 | 5.2 | -- | -- | -- | -- | -- | -0.00271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 388.92 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 2 | 388.96 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 5 | 389.20 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 14 | 390.79 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 19 | 391.60 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 20 | 391.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 25 | 392.37 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 28 | 392.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 30 | 392.70 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 33 | 392.80 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 41 | 393.10 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 50 | 393.22 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 52 | 393.28 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 57 | 393.36 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 62 | 393.39 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 64 | 393.43 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 69 | 393.47 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 84 | 393.61 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 86 | 393.61 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 98 | 393.68 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 112 | 393.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 11 |
| 197 | 394.22 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 217 | 394.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 235 | 394.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 242 | 394.36 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 275 | 394.46 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 277 | 394.48 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 293 | 394.54 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 295 | 394.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 301 | 394.59 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 378 | 394.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 410 | 395.11 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 411 | 395.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 22 |
| 415 | 395.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 416 | 395.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 490 | 395.58 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 634 | 396.92 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 669 | 397.24 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 687 | 397.30 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 707 | 397.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 757 | 397.80 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 795 | 398.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 869 | 398.65 | wind | 5 | 43200 | < th | dose independent | sin | 15 | NA |
| 886 | 398.70 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |