Os06g0638000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os06g0638000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.13 | 0.249 | 10.7 | 0.303 | 0.516 | 0.521 | -0.0488 | -0.862 | 0.0313 | 7.07 | 18.7 | 4289 | -- | -- |
| 29.13 | 0.251 | 10.7 | 0.327 | 0.501 | 0.789 | 0.0251 | -- | 0.0372 | 7.05 | 18.69 | 10073 | -- | -- |
| 28.1 | 0.247 | 10.7 | 0.304 | 0.517 | 0.522 | -- | -0.859 | 0.0302 | 7.06 | 18.7 | 4281 | -- | -- |
| 29.06 | 0.251 | 10.7 | 0.351 | 0.505 | 0.806 | -- | -- | 0.0389 | 7.05 | 18.49 | 10237 | -- | -- |
| 42.17 | 0.302 | 10.7 | 0.38 | -- | 0.565 | -- | -0.678 | 0.06 | -- | 18.7 | 10732 | -- | -- |
| 37.14 | 0.286 | 10.7 | -0.203 | 0.501 | -- | 0.0587 | -- | -0.15 | 7.15 | -- | -- | -- | -- |
| 37.15 | 0.285 | 10.7 | -0.202 | 0.502 | -- | -- | -- | -0.15 | 7.15 | -- | -- | -- | -- |
| 41.36 | 0.3 | 10.7 | 0.513 | -- | 0.835 | -- | -- | 0.0604 | -- | 14.9 | 43834 | -- | -- |
| 31.01 | 0.259 | 10.7 | -- | 0.507 | 0.632 | -- | -- | -0.0432 | 6.62 | 17.7 | 10052 | -- | -- |
| 50.43 | 0.332 | 10.7 | -0.192 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 38.22 | 0.289 | 10.7 | -- | 0.499 | -- | -- | -- | -0.127 | 7.18 | -- | -- | -- | -- |
| 43.9 | 0.309 | 10.7 | -- | -- | 0.57 | -- | -- | -0.052 | -- | 14.78 | 29326 | -- | -- |
| 51.41 | 0.335 | 10.7 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 27.54 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 18 | 27.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 19 | 27.61 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 20 | 27.62 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 21 | 27.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 23 | 27.69 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 25 | 27.70 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 26 | 27.71 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 28 | 27.71 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 29 | 27.71 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 46 | 27.77 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 49 | 27.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 101 | 27.79 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 130 | 27.80 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 138 | 27.80 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 173 | 27.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 180 | 27.81 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 229 | 27.82 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 232 | 27.82 | atmosphere | 995 | 43200 | > th | dose dependent | sin | 11 | NA |
| 238 | 27.82 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 283 | 27.83 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 293 | 27.83 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 11 | NA |
| 341 | 27.84 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 346 | 27.84 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 349 | 27.84 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 358 | 27.84 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 409 | 27.85 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 484 | 27.86 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 487 | 27.86 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 554 | 27.87 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 576 | 27.87 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 646 | 27.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 649 | 27.88 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 768 | 27.89 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 771 | 27.89 | atmosphere | 995 | 43200 | > th | dose dependent | no | NA | NA |
| 836 | 27.89 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 6 | 22 |
| 855 | 27.90 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 3 | NA |
| 886 | 27.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 943 | 27.90 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 6 | 20 |
| 963 | 27.90 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 2 | 22 |