BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0638000 Os06g0638000|J075012E03
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21580.1  | chr1:7557822-7565655 REVERSE LENGTH=2167           113   5e-26

>AT1G21580.1 | chr1:7557822-7565655 REVERSE LENGTH=2167
          Length = 2166

 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 75/127 (59%), Gaps = 5/127 (3%)

Query: 29   GLCTNIACPYRHVKVNLNAPVCEDFLKGYCAYGDEQCHKKHSYVCPVFEATGECPQGSRC 88
            GLC N ACPYRHV VN  AP+C+ FLKGYC+ GDE C KKHSY CPVFEATG C QG +C
Sbjct: 2003 GLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDE-CRKKHSYNCPVFEATGSCSQGLKC 2061

Query: 89   KLHHPXXXXXXXXRR--PDFLQNSSWGRYFDASIDHQDETRKVSLDEDEREKPQRVFTDG 146
            KLHHP        R+   +  Q ++  RYF +  +   E+  +    + R     VF   
Sbjct: 2062 KLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVF--NRRSTDSEVFGME 2119

Query: 147  DLGFISL 153
             L FI+L
Sbjct: 2120 SLDFITL 2126



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,910,399
Number of extensions: 150749
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)