Os06g0635200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0635200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.15 | 0.402 | 12.8 | 1.44 | 1.48 | -1.19 | -0.48 | 0.822 | 0.51 | 8.66 | 1.056 | 1459 | -- | -- |
| 73.85 | 0.4 | 12.8 | 1.5 | 1.47 | -1.35 | -0.556 | -- | 0.509 | 8.52 | 0.9693 | 1471 | -- | -- |
| 73.47 | 0.399 | 12.8 | 1.47 | 1.44 | -1.22 | -- | 1.15 | 0.494 | 8.45 | 1.34 | 1487 | -- | -- |
| 74.65 | 0.402 | 12.8 | 1.52 | 1.47 | -1.36 | -- | -- | 0.516 | 8.56 | 0.97 | 1473 | -- | -- |
| 151.7 | 0.577 | 12.8 | 1.77 | -- | -0.827 | -- | 0.727 | 0.672 | -- | 1.34 | 1487 | -- | -- |
| 93.87 | 0.454 | 12.7 | 1.79 | 1.55 | -- | -0.606 | -- | 0.688 | 8.8 | -- | -- | -- | -- |
| 95.1 | 0.457 | 12.7 | 1.77 | 1.55 | -- | -- | -- | 0.688 | 8.78 | -- | -- | -- | -- |
| 151.89 | 0.577 | 12.8 | 1.76 | -- | -0.842 | -- | -- | 0.684 | -- | 1.035 | 1543 | -- | -- |
| 94.09 | 0.452 | 12.8 | -- | 1.68 | -1.16 | -- | -- | 0.19 | 8.67 | 0.3301 | 47448 | -- | -- |
| 231.25 | 0.711 | 12.8 | 1.78 | -- | -- | -- | -- | 0.7 | -- | -- | -- | -- | -- |
| 178.07 | 0.624 | 12.8 | -- | 1.55 | -- | -- | -- | 0.49 | 8.69 | -- | -- | -- | -- |
| 225.35 | 0.699 | 12.9 | -- | -- | -1.47 | -- | -- | 0.0972 | -- | 0.0001171 | 47520 | -- | -- |
| 314.47 | 0.828 | 12.8 | -- | -- | -- | -- | -- | 0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 5 | 68.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 6 | 68.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 7 | 68.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 8 | 68.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 9 | 68.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 23 | 68.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 53 | 68.53 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 134 | 69.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 145 | 69.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 208 | 69.59 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 210 | 69.60 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 272 | 69.84 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 289 | 69.99 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 305 | 70.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 306 | 70.16 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 307 | 70.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 319 | 70.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 331 | 70.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 385 | 70.62 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 405 | 70.75 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 435 | 71.20 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 442 | 71.25 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 479 | 71.48 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 511 | 71.62 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 519 | 71.68 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 526 | 71.73 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 625 | 72.26 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 642 | 72.40 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 656 | 72.47 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 660 | 72.53 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 667 | 72.55 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 708 | 72.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 710 | 72.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 711 | 72.85 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 726 | 72.94 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 729 | 72.95 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 764 | 73.16 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 775 | 73.24 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 795 | 73.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 802 | 73.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 809 | 73.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 812 | 73.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 837 | 73.39 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 873 | 73.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 902 | 73.53 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 917 | 73.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 926 | 73.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 963 | 73.60 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 977 | 73.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 991 | 73.65 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |