Os06g0634300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nudix hydrolase 2 (EC 3.6.1.-) (AtNUDT2) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22).
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Os06g0634300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nudix hydrolase 2 (EC 3.6.1.-) (AtNUDT2) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.2 | 0.609 | 9.3 | -1.17 | 2.2 | -1.07 | 0.27 | -0.779 | -0.936 | 8.72 | 70.28 | 1301 | -- | -- |
| 169.1 | 0.606 | 9.32 | -1.27 | 2.18 | -1.13 | 0.188 | -- | -0.989 | 8.7 | 71.25 | 1302 | -- | -- |
| 168.43 | 0.604 | 9.3 | -1.16 | 2.19 | -1.06 | -- | -0.748 | -0.938 | 8.69 | 70.36 | 1304 | -- | -- |
| 169.23 | 0.606 | 9.32 | -1.26 | 2.19 | -1.13 | -- | -- | -0.986 | 8.69 | 71.28 | 1302 | -- | -- |
| 421.17 | 0.956 | 9.36 | -1.14 | -- | -1.1 | -- | -0.588 | -0.928 | -- | 72 | 1444 | -- | -- |
| 215.73 | 0.689 | 9.28 | -1.03 | 2.15 | -- | -0.0205 | -- | -0.813 | 8.38 | -- | -- | -- | -- |
| 215.73 | 0.688 | 9.28 | -1.03 | 2.15 | -- | -- | -- | -0.813 | 8.38 | -- | -- | -- | -- |
| 422.38 | 0.957 | 9.38 | -1.25 | -- | -1.15 | -- | -- | -0.965 | -- | 71.98 | 1443 | -- | -- |
| 198.28 | 0.656 | 9.26 | -- | 2.39 | -1.53 | -- | -- | -0.808 | 8.65 | 81.01 | 2562 | -- | -- |
| 473.35 | 1.02 | 9.34 | -1.02 | -- | -- | -- | -- | -0.79 | -- | -- | -- | -- | -- |
| 243.87 | 0.731 | 9.25 | -- | 2.15 | -- | -- | -- | -0.698 | 8.41 | -- | -- | -- | -- |
| 452.83 | 0.991 | 9.4 | -- | -- | -1.69 | -- | -- | -1.09 | -- | 72.31 | 7231 | -- | -- |
| 500.85 | 1.04 | 9.31 | -- | -- | -- | -- | -- | -0.677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 2 | 165.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 3 | 166.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 5 | 166.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 6 | 166.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 9 | 166.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 18 | 166.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 19 | 166.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 23 | 166.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 24 | 166.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 31 | 166.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 34 | 166.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 39 | 166.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 40 | 166.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 49 | 166.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 55 | 166.94 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 57 | 166.94 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 66 | 166.99 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 21 | NA |
| 70 | 167.00 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 109 | 167.24 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 159 | 167.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 168 | 167.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 172 | 167.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 17 |
| 180 | 167.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 183 | 167.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 207 | 167.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 292 | 168.12 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 313 | 168.21 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 315 | 168.22 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 321 | 168.24 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 327 | 168.28 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 330 | 168.29 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 335 | 168.30 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 402 | 168.64 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 413 | 168.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 491 | 169.12 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 492 | 169.12 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 504 | 169.14 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 505 | 169.14 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 539 | 169.17 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 597 | 169.28 | humidity | 70.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 664 | 169.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 8 |
| 676 | 169.63 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 749 | 169.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 760 | 169.98 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 765 | 169.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 813 | 170.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 816 | 170.14 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 838 | 170.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 844 | 170.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 874 | 170.47 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 890 | 170.52 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 943 | 170.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 945 | 170.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 970 | 170.81 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 975 | 170.83 | temperature | 30.0 | 720 | > th | dose independent | sin | 18 | NA |
| 978 | 170.83 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 979 | 170.83 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |