Os06g0625400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Metalloendopeptidase.
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Os06g0625400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Metalloendopeptidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.34 | 0.309 | 13.8 | 0.509 | 1.98 | -0.764 | -0.334 | 2.36 | -0.0113 | 16 | 20.42 | 904 | -- | -- |
| 46.1 | 0.316 | 13.8 | 0.0795 | 1.96 | -0.654 | -0.608 | -- | -0.158 | 15.6 | 16.67 | 4313 | -- | -- |
| 43.63 | 0.308 | 13.8 | 0.527 | 1.96 | -0.757 | -- | 2.38 | -0.00907 | 15.9 | 20.36 | 946 | -- | -- |
| 46.43 | 0.317 | 13.8 | 0.0476 | 1.95 | -0.733 | -- | -- | -0.157 | 15.7 | 16.13 | 3324 | -- | -- |
| 228.57 | 0.708 | 13.9 | -0.8 | -- | 1.45 | -- | -1.11 | -0.628 | -- | 20.36 | 946 | -- | -- |
| 56.09 | 0.351 | 13.9 | -0.251 | 1.99 | -- | -0.483 | -- | -0.292 | 15.6 | -- | -- | -- | -- |
| 56.8 | 0.353 | 13.9 | -0.259 | 1.98 | -- | -- | -- | -0.295 | 15.6 | -- | -- | -- | -- |
| 229.82 | 0.709 | 13.9 | -0.611 | -- | 1.39 | -- | -- | -0.573 | -- | 20.36 | 946 | -- | -- |
| 46.35 | 0.317 | 13.8 | -- | 1.97 | -0.725 | -- | -- | -0.152 | 15.7 | 15.17 | 3203 | -- | -- |
| 275.64 | 0.776 | 13.9 | -0.342 | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
| 58.57 | 0.358 | 13.9 | -- | 1.99 | -- | -- | -- | -0.266 | 15.6 | -- | -- | -- | -- |
| 239.28 | 0.723 | 13.9 | -- | -- | 1.26 | -- | -- | -0.487 | -- | 20.36 | 946 | -- | -- |
| 278.73 | 0.779 | 13.9 | -- | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 13 | 35.26 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 30 | 36.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 51 | 36.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 56 | 37.11 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 88 | 37.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 94 | 37.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 97 | 37.93 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 105 | 38.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 127 | 38.18 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 13 |
| 208 | 38.75 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 15 |
| 238 | 38.95 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 15 |
| 249 | 39.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 308 | 39.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 373 | 39.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 487 | 40.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 613 | 40.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 917 | 41.06 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 7 |
| 932 | 41.10 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 6 |