BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0625400 Os06g0625400|AK066566
         (846 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42390.1  | chr5:16945308-16952647 FORWARD LENGTH=1266        1236   0.0  

>AT5G42390.1 | chr5:16945308-16952647 FORWARD LENGTH=1266
          Length = 1265

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/852 (70%), Positives = 701/852 (82%), Gaps = 18/852 (2%)

Query: 7    FGAMASLFAPKLPGGLAASLTGERSPAADKIKPVKRERQAIRPPVEHKWSLPGVAQDAKP 66
            FGAMA+   PKLP GL  + + E++  AD+ K +KRER AIRPPVEH WSLPG + D KP
Sbjct: 420  FGAMANFLVPKLPAGLGGTFSNEKTNTADQSKMIKRERHAIRPPVEHNWSLPGTSVDLKP 479

Query: 67   PAIFQHELIQSFSINMFCKIPVNQVQTYKDLRSVLMKRIFLSALHFRINTRYKSSNPPFT 126
            P IF+HEL+Q+F+INMFCKIPV++VQT+ DLR+VLMKRIFLSALHFRINTRYKSSNPPFT
Sbjct: 480  PQIFKHELLQNFAINMFCKIPVSKVQTFGDLRNVLMKRIFLSALHFRINTRYKSSNPPFT 539

Query: 127  SVELDHSDSGREGCTVTTLTVTAEPQNWRSAIKVAVHEVRRLKEFGVTMGEMTRYMDALI 186
            SVELDHSDSGREGCTVTTLTVTAEPQNW++A+KVAV EVRRLKEFGVT GE+TRYMDAL+
Sbjct: 540  SVELDHSDSGREGCTVTTLTVTAEPQNWQNAVKVAVQEVRRLKEFGVTRGELTRYMDALL 599

Query: 187  KDSEQLAMMIDSVPSVDNLDFIMESDALRHTVMDQLQGHESLLAVAETVTLEEVNTVGAE 246
            KDSE LA MID+V SVDNLDFIMESDAL HTVMDQ QGHE+L+AVA TVTLEEVNTVGA+
Sbjct: 600  KDSEHLAAMIDNVSSVDNLDFIMESDALSHTVMDQTQGHETLVAVAGTVTLEEVNTVGAK 659

Query: 247  VLEFISDYGKPDAPLPAAIVACVPKKVHMDGVGETDFEIHPEEITDSIKAGLXXXXXXXX 306
            VLEFISD+G+P APLPAAIVACVP KVH+DGVGE+DF I P+EI +S+K+GL        
Sbjct: 660  VLEFISDFGRPTAPLPAAIVACVPTKVHVDGVGESDFNISPDEIIESVKSGLLAPIEAEP 719

Query: 307  XXXXXKELITRSELEDLKLQRKPSFASLSKEENVVKIFDDETGIAQRRLSNGISINYKIT 366
                 KELI++S+L++L LQR P F  +     + K+ D ETGI Q RLSNGI++NYK +
Sbjct: 720  ELEVPKELISQSQLKELTLQRNPCFVPIPG-SGLTKLHDKETGITQLRLSNGIAVNYKKS 778

Query: 367  QNEARVGVMRLIVGGGRATEDSESKGSVIVGVRTLSEGGCVGNFSREQVELFCVNNLINC 426
              E+R GVMRLIVGGGRA E S+SKG+V+VGVRTLSEGG VG+FSREQVELFCVN+LINC
Sbjct: 779  TTESRAGVMRLIVGGGRAAETSDSKGAVVVGVRTLSEGGRVGDFSREQVELFCVNHLINC 838

Query: 427  SLESNEEFIFMEFRFALRDNGMRAAFQLLHMVLEHNVWLEDAFDRATQLYLSYYRSIPKS 486
            SLES EEFI MEFRF LRDNGM+AAFQLLHMVLE +VWLEDAFDRA QLYLSY+RSIPKS
Sbjct: 839  SLESTEEFIAMEFRFTLRDNGMQAAFQLLHMVLERSVWLEDAFDRARQLYLSYFRSIPKS 898

Query: 487  LERSTAHKLMLAMLNHDERFVEPSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEE 546
            LER+TAHKLM+AMLN DERFVEP+P SLQ L L+SVKDAVM+ FVGDNMEVSIVGDF+EE
Sbjct: 899  LERATAHKLMIAMLNGDERFVEPTPKSLQSLNLESVKDAVMSHFVGDNMEVSIVGDFSEE 958

Query: 547  EVESCVLDYLGTVSAPKSSKTQEHIEKISFLPFPSDLHFQQVYIKDTDERACAYIAGPAP 606
            E+E C+LDYLGTV A   S      E I F    + L FQQV++KDTDERACAYIAGPAP
Sbjct: 959  EIERCILDYLGTVKASHDSAKPPGSEPILFRQPTAGLQFQQVFLKDTDERACAYIAGPAP 1018

Query: 607  NRWGFATEGNDLFNVIRS--------SSGDAQVSESANTDLTERKHNDVRSHSLFFGITL 658
            NRWGF  +G+DLF  +             + Q+ E  + +L ++    +R+H LFFG+T+
Sbjct: 1019 NRWGFTVDGDDLFQSVSKLPVAHDGLLKSEEQLLEGGDRELQKK----LRAHPLFFGVTM 1074

Query: 659  SLLAEIINSRLFTTVRDSMGLTYDVSFELNLFDKLDLGWYVIAVTSTPSKVHKAVDACKG 718
             LLAEIINSRLFTTVRDS+GLTYDVSFELNLFD+L+LGWYVI+VTSTP KV+KAVDACK 
Sbjct: 1075 GLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLNLGWYVISVTSTPGKVYKAVDACKS 1134

Query: 719  VLRGLHSNKIVERELDRAKRTLLMKHEAETKTNAYWLGLLAHLQSSSVPRKEISCIKELT 778
            VLRGLHSN+I  RELDRAKRTLLM+HEAE K+NAYWL LLAHLQ+SSVPRKE+SCIKEL 
Sbjct: 1135 VLRGLHSNQIAPRELDRAKRTLLMRHEAELKSNAYWLNLLAHLQASSVPRKELSCIKELV 1194

Query: 779  MLYESATIEDLYLAYEHLKVDESSLFACIGIAGAESGEETT----DDELDMGLHGMGPIG 834
             LYE+A+IED+YLAY  L+VDE SL++CIGIAGA++GEE T    ++E +    G+ P+ 
Sbjct: 1195 SLYEAASIEDIYLAYNQLRVDEDSLYSCIGIAGAQAGEEITVLSEEEEPEDVFSGVVPV- 1253

Query: 835  GRGLSTMTRPTT 846
            GRG S  TRPTT
Sbjct: 1254 GRGSSMTTRPTT 1265



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,436,969
Number of extensions: 718384
Number of successful extensions: 1873
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1868
Number of HSP's successfully gapped: 1
Length of query: 846
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 739
Effective length of database: 8,173,057
Effective search space: 6039889123
Effective search space used: 6039889123
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)