Os06g0618600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase subunit, RPB5/RPB6-like domain containing protein.
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Os06g0618600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase subunit, RPB5/RPB6-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.31 | 0.171 | 11.1 | 0.115 | 0.324 | -0.59 | -0.536 | -0.763 | 0.255 | 2.44 | 20.93 | 9 | -- | -- |
| 13.64 | 0.172 | 11.1 | 0.246 | 0.319 | -0.633 | -0.31 | -- | 0.294 | 2.37 | 20.98 | 18 | -- | -- |
| 14 | 0.174 | 11.1 | 0.223 | 0.33 | -0.591 | -- | -0.161 | 0.287 | 2.42 | 20.79 | 17 | -- | -- |
| 14 | 0.174 | 11.1 | 0.254 | 0.324 | -0.615 | -- | -- | 0.293 | 2.43 | 20.97 | 18 | -- | -- |
| 18.01 | 0.198 | 11.1 | 0.34 | -- | -0.922 | -- | 0.0558 | 0.352 | -- | 21.1 | 14 | -- | -- |
| 19.67 | 0.208 | 11.1 | 0.121 | 0.558 | -- | -0.166 | -- | 0.188 | 2.49 | -- | -- | -- | -- |
| 19.77 | 0.208 | 11.1 | 0.125 | 0.558 | -- | -- | -- | 0.189 | 2.5 | -- | -- | -- | -- |
| 18.01 | 0.198 | 11.1 | 0.327 | -- | -0.917 | -- | -- | 0.35 | -- | 21.1 | 14 | -- | -- |
| 15.58 | 0.185 | 11.1 | -- | 0.362 | -0.526 | -- | -- | 0.251 | 2.54 | 21.16 | 18 | -- | -- |
| 38.07 | 0.288 | 11.1 | 0.149 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 20.18 | 0.21 | 11.1 | -- | 0.56 | -- | -- | -- | 0.175 | 2.5 | -- | -- | -- | -- |
| 20.68 | 0.212 | 11.1 | -- | -- | -0.85 | -- | -- | 0.303 | -- | 21.26 | 10 | -- | -- |
| 38.66 | 0.29 | 11.1 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 13.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 14 | 13.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 20 | 13.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 23 | 13.39 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 25 | 13.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 28 | 13.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 43 | 13.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 49 | 13.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 75 | 13.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 94 | 13.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 120 | 13.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 123 | 14.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 128 | 14.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 162 | 14.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 185 | 14.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 186 | 14.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 188 | 14.18 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 191 | 14.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 192 | 14.19 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 216 | 14.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 240 | 14.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 267 | 14.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 285 | 14.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 313 | 14.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 358 | 14.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 391 | 14.53 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 589 | 14.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 836 | 14.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 938 | 14.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |