BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0618600 Os06g0618600|AK060212
         (378 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50120.1  | chr1:18562302-18566015 FORWARD LENGTH=533          329   1e-90

>AT1G50120.1 | chr1:18562302-18566015 FORWARD LENGTH=533
          Length = 532

 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/358 (50%), Positives = 222/358 (62%), Gaps = 18/358 (5%)

Query: 18  VQLEARVPLQICVSQKSSNLLNEEVNF----PLPIEQPDIFWREKDEDSEWSKANDNTDL 73
           +++E R+PLQ+ V QK++ LL EE       P    Q +I+W+E D DSEW++AND  D 
Sbjct: 175 IEVETRIPLQVWVIQKNNGLLLEEDQIDGIVPTSTIQTEIYWKEMDGDSEWTRANDAYDS 234

Query: 74  -EEGYXXXXXXXXXXXXYNKANPEXXXXXXXXXXXXXXXXXXXEPLYSRERPSFPSYSPI 132
            E+GY            Y   +                     +  Y  ER        +
Sbjct: 235 GEDGYDSSRDEISSVSSYPNKSNLNRTFGSSLSLNSGPRLSMKDTSYVEERVGSSPKMML 294

Query: 133 PRLSVSEISDDHGGGVVSPQRKLNHLLSDHHP--SNGQMFSLDPDRSNDDAGPPLTPKYV 190
            +LS + +S D G  V SP +  N ++    P  +NG   S+ P      AG        
Sbjct: 295 SQLSAAVVSYDSGTDVSSPHKSSNSVVPSQQPKQTNGAGASMSPG-----AGAR------ 343

Query: 191 EPAGSEGFMRGRSYNIRIDDQVLLRFSPKNSDSTYYFGDMIGGALTFFHGSGTRRCLEVS 250
           EP  SEGF RGRSYNIR+DDQVLLRFSPKN+DSTYYF D IGG LTFFH  GTRRCLEVS
Sbjct: 344 EPVPSEGFTRGRSYNIRMDDQVLLRFSPKNADSTYYFSDTIGGTLTFFHEEGTRRCLEVS 403

Query: 251 VTLETSETVNPRVIHPSRRSSPSITKVHSEHYEVVADLHQTSFLFSVPIDGPMSFSTSKV 310
           VTLET ET+N R +HPSRR+SP++TKV S+H+EVVADL QTSFLFS+P DGPMSFST +V
Sbjct: 404 VTLETLETINRRFVHPSRRNSPTLTKVQSDHHEVVADLIQTSFLFSIPTDGPMSFSTPRV 463

Query: 311 SVQWSLRFEFFTTPEGIDSSRYEHPLLVEKREKGDWVLPITVYAPPLRRQAIHGRNDR 368
           SVQW LRFEF TTP+ +D SRYEHPLLV +REK +WVLPITV+APP R      R D+
Sbjct: 464 SVQWILRFEFLTTPKSVDLSRYEHPLLVPEREKSEWVLPITVHAPPPRTSGAQNRGDK 521



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,608,208
Number of extensions: 381057
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)