Os06g0612800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PVPR3 protein.
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Os06g0612800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PVPR3 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.51 | 0.32 | 14.5 | 0.642 | 0.794 | -0.7 | 0.401 | -0.245 | 0.425 | 0.22 | 24.3 | 234 | -- | -- |
| 46.59 | 0.318 | 14.5 | 0.619 | 0.799 | -0.673 | 0.358 | -- | 0.42 | 0.207 | 24.38 | 236 | -- | -- |
| 47.16 | 0.32 | 14.5 | 0.624 | 0.8 | -0.68 | -- | -0.104 | 0.424 | 0.146 | 24.3 | 234 | -- | -- |
| 47.14 | 0.32 | 14.5 | 0.597 | 0.786 | -0.666 | -- | -- | 0.414 | 0.184 | 24.4 | 237 | -- | -- |
| 73.86 | 0.4 | 14.5 | 0.525 | -- | -0.918 | -- | -0.0317 | 0.351 | -- | 28.5 | 895 | -- | -- |
| 52.93 | 0.341 | 14.5 | 0.775 | 0.737 | -- | 0.344 | -- | 0.537 | 23.9 | -- | -- | -- | -- |
| 53.44 | 0.342 | 14.5 | 0.762 | 0.736 | -- | -- | -- | 0.536 | 23.9 | -- | -- | -- | -- |
| 73.87 | 0.4 | 14.5 | 0.519 | -- | -0.919 | -- | -- | 0.349 | -- | 28.51 | 895 | -- | -- |
| 48.84 | 0.325 | 14.5 | -- | 0.717 | -0.759 | -- | -- | 0.341 | 23.8 | 19.2 | 44970 | -- | -- |
| 87.49 | 0.437 | 14.5 | 0.784 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 68.73 | 0.388 | 14.5 | -- | 0.745 | -- | -- | -- | 0.451 | 23.9 | -- | -- | -- | -- |
| 80.07 | 0.417 | 14.5 | -- | -- | -1.13 | -- | -- | 0.251 | -- | 28.4 | 904 | -- | -- |
| 103.69 | 0.475 | 14.5 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 2 | 40.88 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 8 |
| 3 | 41.03 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 7 | 41.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 8 | 41.34 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 9 | 41.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 21 | 41.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 26 | 41.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 30 | 41.93 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 58 | 42.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 77 | 42.61 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 82 | 42.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 84 | 42.68 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 131 | 43.10 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 16 |
| 326 | 44.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 330 | 44.09 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 346 | 44.14 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 349 | 44.15 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 14 |
| 354 | 44.17 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 10 |
| 464 | 44.50 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 466 | 44.50 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 474 | 44.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 480 | 44.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 489 | 44.54 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 506 | 44.56 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 508 | 44.57 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 523 | 44.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 541 | 44.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 583 | 44.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 598 | 44.72 | humidity | 60 | 43200 | < th | dose dependent | sin | 1 | NA |
| 614 | 44.74 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 618 | 44.74 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 622 | 44.75 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 678 | 44.81 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 694 | 44.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 23 |
| 695 | 44.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 696 | 44.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 701 | 44.82 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 718 | 44.82 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 729 | 44.83 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 731 | 44.83 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 793 | 44.87 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 809 | 44.88 | humidity | 80 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 810 | 44.88 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 815 | 44.88 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 830 | 44.89 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 831 | 44.89 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 860 | 44.92 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 896 | 44.96 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 902 | 44.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 985 | 45.05 | radiation | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |