Os06g0611900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Victorin binding protein.
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Os06g0611900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Victorin binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.24 | 0.291 | 15.7 | 0.691 | 0.298 | -1.2 | -0.0687 | -0.541 | -0.0462 | 21.5 | 14.72 | 589 | -- | -- |
| 38.35 | 0.288 | 15.7 | 0.775 | 0.297 | -1.14 | -0.162 | -- | -0.0168 | 21.3 | 16.32 | 564 | -- | -- |
| 38.25 | 0.288 | 15.7 | 0.683 | 0.298 | -1.19 | -- | -0.59 | -0.0484 | 21.4 | 14.9 | 580 | -- | -- |
| 38.44 | 0.289 | 15.7 | 0.78 | 0.298 | -1.13 | -- | -- | -0.0204 | 21.3 | 16.46 | 564 | -- | -- |
| 41.33 | 0.299 | 15.7 | 0.666 | -- | -1.04 | -- | -0.349 | -0.073 | -- | 13.37 | 305 | -- | -- |
| 56.15 | 0.351 | 15.7 | 0.5 | 0.171 | -- | 0.124 | -- | -0.205 | 3.17 | -- | -- | -- | -- |
| 56.19 | 0.351 | 15.7 | 0.498 | 0.171 | -- | -- | -- | -0.205 | 2.86 | -- | -- | -- | -- |
| 40.99 | 0.298 | 15.7 | 0.835 | -- | -0.991 | -- | -- | -0.0197 | -- | 15.4 | 1769 | -- | -- |
| 51.92 | 0.336 | 15.7 | -- | 0.222 | -0.704 | -- | -- | -0.164 | 21.4 | 19.97 | 478 | -- | -- |
| 57.88 | 0.355 | 15.7 | 0.505 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 62.72 | 0.37 | 15.7 | -- | 0.181 | -- | -- | -- | -0.261 | 2.88 | -- | -- | -- | -- |
| 53.46 | 0.341 | 15.7 | -- | -- | -0.653 | -- | -- | -0.165 | -- | 19.94 | 286 | -- | -- |
| 64.61 | 0.375 | 15.7 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 4 | 37.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 10 | 37.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 51 | 38.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 52 | 38.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 54 | 38.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 60 | 38.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 64 | 38.30 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 66 | 38.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 69 | 38.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 78 | 38.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 88 | 38.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 94 | 38.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 98 | 38.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 108 | 38.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 132 | 38.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 159 | 38.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 169 | 38.46 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 286 | 38.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 369 | 38.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 370 | 38.67 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 393 | 38.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 408 | 38.71 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 536 | 38.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 542 | 38.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 740 | 38.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 968 | 39.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |