Os06g0607100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0607100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.64 | 0.601 | 10.9 | -0.477 | 4.51 | 0.992 | -0.342 | 5.56 | -0.924 | 7.99 | 1.39 | 5753 | -- | -- |
| 184.26 | 0.632 | 11.1 | -1.35 | 4.5 | 1 | -0.4 | -- | -1.34 | 8.08 | 10.15 | 28745 | -- | -- |
| 163.85 | 0.596 | 10.9 | -0.457 | 4.53 | 1.02 | -- | 5.62 | -0.927 | 7.99 | 1.318 | 5734 | -- | -- |
| 184.26 | 0.632 | 11.1 | -1.39 | 4.48 | 1.02 | -- | -- | -1.35 | 8.08 | 10.61 | 27162 | -- | -- |
| 1001.81 | 1.48 | 11.1 | -1.55 | -- | 1.67 | -- | -0.541 | -1.01 | -- | 1.318 | 5734 | -- | -- |
| 205.34 | 0.672 | 11 | -1.57 | 4.51 | -- | -0.348 | -- | -1.02 | 7.93 | -- | -- | -- | -- |
| 205.7 | 0.672 | 11 | -1.58 | 4.51 | -- | -- | -- | -1.02 | 7.94 | -- | -- | -- | -- |
| 1003.72 | 1.48 | 11.1 | -1.54 | -- | 1.66 | -- | -- | -1.01 | -- | 1.318 | 5734 | -- | -- |
| 234.5 | 0.713 | 11 | -- | 4.5 | 0.916 | -- | -- | -1.06 | 8.13 | 29.42 | 24471 | -- | -- |
| 1315.44 | 1.69 | 11.1 | -1.53 | -- | -- | -- | -- | -0.962 | -- | -- | -- | -- | -- |
| 271.51 | 0.771 | 11 | -- | 4.5 | -- | -- | -- | -0.845 | 7.96 | -- | -- | -- | -- |
| 1066.56 | 1.53 | 11.1 | -- | -- | 1.66 | -- | -- | -0.84 | -- | 1.318 | 5734 | -- | -- |
| 1377.4 | 1.73 | 11.1 | -- | -- | -- | -- | -- | -0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.47 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 2 | 151.63 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 3 | 152.36 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 4 | 152.69 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 5 | 152.74 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 6 | 152.75 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 13 | 153.08 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 23 | 15 |
| 15 | 153.11 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 16 | 153.11 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 32 | 153.42 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 38 | 153.70 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 67 | 154.32 | humidity | 80.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 70 | 154.38 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 87 | 154.68 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 96 | 154.88 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 97 | 154.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 99 | 154.90 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 103 | 154.94 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 106 | 154.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 108 | 154.98 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 120 | 155.05 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 122 | 155.10 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 130 | 155.15 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 132 | 155.17 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 133 | 155.19 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 145 | 155.23 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 186 | 155.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 218 | 155.68 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 234 | 155.78 | humidity | 80.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 237 | 155.79 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 246 | 155.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 252 | 155.90 | temperature | 20.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 284 | 156.05 | temperature | 20.0 | 43200 | < th | dose independent | sin | 20 | NA |
| 296 | 156.09 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 324 | 156.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 328 | 156.26 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 337 | 156.29 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 357 | 156.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 387 | 156.54 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 406 | 156.61 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 417 | 156.64 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 418 | 156.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 467 | 156.84 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 469 | 156.85 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 472 | 156.86 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 478 | 156.87 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 510 | 156.95 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 512 | 156.96 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 520 | 156.97 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 532 | 157.00 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 564 | 157.08 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 606 | 157.16 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 698 | 157.36 | temperature | 20.0 | 43200 | < th | dose dependent | no | NA | NA |
| 716 | 157.40 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 717 | 157.40 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 718 | 157.40 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 726 | 157.41 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 842 | 157.60 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 865 | 157.64 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 935 | 157.78 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 989 | 157.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 992 | 157.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 2 |